Gene detail information of Glyur003119s00047084 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G17390.1 | 0 | S-adenosylmethionine synthetase family protein |
| NR | XP_003546550.1 | 0 | PREDICTED: S-adenosylmethionine synthase-like isoform 1 [Glycine max] |
| COG | YP_001179664.1 | 1.00E-154 | S-adenosylmethionine synthetase [Caldicellulosiruptor saccharolyticus DSM 8903] |
| Swissprot | tr|A4ULF8|METK_MEDSF | 0 | S-adenosylmethionine synthase |
| trEMBL | tr|I1MHR0|I1MHR0_SOYBN | 0 | S-adenosylmethionine synthase {ECO:0000256|RuleBase:RU000541} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03119 | 20195 | 22377 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00789 | metK | EC:2.5.1.6 | Biosynthesis of amino acids | map01230 |
| Cysteine and methionine metabolism | map00270 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003119s00047084.1 | PF00438.15 | S-AdoMet_synt_N | 51 | 141 | 1.40E-35 |
| Glyur003119s00047084.1 | PF02772.11 | S-AdoMet_synt_M | 156 | 278 | 1.80E-48 |
| Glyur003119s00047084.1 | PF02773.11 | S-AdoMet_synt_C | 280 | 421 | 1.30E-68 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 387.638 |
| SRR1783600 | control | 383.509 |
| SRR1783602 | moderate drought stress | 175.893 |
| SRR1811619 | moderate drought stress | 173.969 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 488.146 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 482.899 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 395.824 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 386.822 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 717.059 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 718.852 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 400.714 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 400.262 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 699.810 |
| SRR2868004 | Drought Stress (root) | 657.870 |
| SRR2967015 | Control (root) | 528.454 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 925.844 |
| SRR9715740 | Leaf | 599.186 |
| SRR9715741 | Leaf | 1017.592 |
| SRR9715739 | Root | 703.445 |
| SRR9715742 | Root | 875.960 |
| SRR9715743 | Root | 833.002 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1517.991 |
| SRR8749028 | MeJA induced 9h | 1272.702 |
| SRR8749029 | MeJA induced 9h | 1296.117 |
| SRR8749030 | Uninduced | 1645.963 |
| SRR8749031 | Uninduced | 1433.470 |
| SRR8749032 | Uninduced | 1546.374 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 640.232 |
| SRR8400027 | Control - Root | 679.743 |