Gene detail

Gene detail information of Glyur003117s00039297

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G51670.1	5.00E-36	Protein of unknown function (DUF668)
NR	XP_004515634.1	0	PREDICTED: uncharacterized protein LOC101506729 [Cicer arietinum]
trEMBL	tr\|G7JTD5\|G7JTD5_MEDTR	0	Avr9/Cf-9 rapidly elicited protein {ECO:0000313\|EMBL:AES87101.2}

Sequence

Transcript Sequence

>Glyur003117s00039297.1
ATGCCGGCGGCGGACACCCTCGGGATCCTCGCCTTCGACGCCGGCAAGACTATGGGCTGCCTAGTCTCCCTCTACAACTCCCTCTCCGACGAAGAAACAACCAAGCTCTGCCGCAAGGTGATCAAATCGAAGGGCGTTGCCTACTTGAATTCCCAGCAAGAGTGGTTCCTCCTCAACCTCGCCGCCGCGGAGCGCTTAGAGGAGCTTGACGCCGCGGCCTCCACCGTCTCGCGCCTAGGCCTGAAGTGCTCTGACCCCGACCTTTCCCAGTTTGGCCTTGTTTACGCCGAACTGAAACAGATCGGCGTAGCCCGCCTCCGGCAGCCACAGTATGGCTCCCGGAGGGCGCACAAGGTCGTGGACAAGGCGGAGAAGCTTGTCTCCGCCACCGCAAACCTCCACGCCGCCATGGAGTCTTTGGCAGAGATGGAGGTGGCGGAGAAAAAGAGACAACAACTACAACAAAAACAAATACAGTGTGGGAAAACAATGGGTCCCAAGCCGAACATTGATTATTTCAACGAGAAGATAGCATATCAGAGGAAGCACGTGCAGCATTTTAAGGAAACATCATTGTGGGAACAAACATTCGACAAAACGGTTGGGATCATGGCTAGGCTTATTTGCATTGTCTACATGAGAATATGCTCTGTTTTCGGAGCCTATATCACTGGAAGCAATAACAATAACAATAACAACAACAATAATGACAACCAAAATTGCCTCCTTGAATACCGCGAGTTGTATTGCACAACTCGCGGGATCTTCGAGTGGCACGAGGAATCGCTTCATAAGCGAGTGACGAAGTCTGGGCCCATTCCAAAGGCCAAAAAAATGGATTCTGATCCTCCGTTGCAGTGTAGCCTCCGTGGCAGAGATGCTGTACCAAAGGAGAAAACGAATGGGAAGGTTTTGAAGCTGGCANCGTCATCAACAGTGGGCGGGGCAGGGCTCTCGGTGAGGTACGCGAATGTGATCCTGCTGGTGGACCGGTACCTTCACGCGCCGGCNACAGTTGGGGAGGACGCGCGTGAGGCATTGTACGAGATGTTGCCGGTGAGGCTTAGGGGGAAGGTGAGGGCGAAGCTGAGGGGGCGATGGGGGAAAGAGGAGGGAGGCAACGAGCACTTGCTGGCAGAAGGGTGGCGGGAGGCCGTGGAGGAGCTGATGGAGTGGCTGGCTCCGGTGGCACACGACACGCTGCGGTGGCAGGCGGAGAGGCACTTGGAAAAGGCACGGTTCGACACGAAACCGACGGTGATGCTGCTGCAGACGCTGCATTACTCCGACTTGGAGAAGGCGGAGGCGGCCATTGTGGAGGTAAATAGGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03117	3859	5894	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003117s00039297.1	PF11961.3	DUF3475	9	64	4.70E-15
Glyur003117s00039297.1	PF05003.7	DUF668	312	402	1.20E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.139
SRR1783600	control	13.390
SRR1783602	moderate drought stress	2.837
SRR1811619	moderate drought stress	2.820

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	56.302
DRR006520	Root Summer glycyrrhizin high producing strain	55.597
DRR006521	Root Winter glycyrrhizin high producing strain	0.167
DRR006522	Root Winter glycyrrhizin high producing strain	0.163
DRR006523	Root Summer glycyrrhizin low producing strain	96.762
DRR006524	Root Summer glycyrrhizin low producing strain	95.745
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.344
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.347

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.244
SRR2868004	Drought Stress (root)	7.494
SRR2967015	Control (root)	31.373

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.581
SRR9715740	Leaf	5.749
SRR9715741	Leaf	6.401
SRR9715739	Root	48.716
SRR9715742	Root	160.500
SRR9715743	Root	137.805

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	26.397
SRR8749028	MeJA induced 9h	14.902
SRR8749029	MeJA induced 9h	21.839
SRR8749030	Uninduced	5.433
SRR8749031	Uninduced	1.841
SRR8749032	Uninduced	2.127

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.934
SRR8400027	Control - Root	8.338