Gene detail information of Glyur003115s00040373 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | XP_004492988.1 | 9.40E-19 | PREDICTED: CASP-like protein RCOM_1446020-like [Cicer arietinum] |
| Swissprot | tr|B9RH17|CSPLA_RICCO | 2.00E-08 | CASP-like protein 1F2 |
| trEMBL | tr|G7KW47|G7KW47_MEDTR | 6.00E-19 | CASP-like protein {ECO:0000256|RuleBase:RU361233} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03115 | 10663 | 19567 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003115s00040373.1 | PF04535.7 | DUF588 | 51 | 102 | 4.20E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 67.244 |
| SRR1783600 | control | 64.916 |
| SRR1783602 | moderate drought stress | 14.899 |
| SRR1811619 | moderate drought stress | 15.181 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 40.787 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 36.788 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.534 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.306 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 33.186 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 31.850 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 32.133 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 30.863 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.567 |
| SRR2868004 | Drought Stress (root) | 2.842 |
| SRR2967015 | Control (root) | 3.059 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.160 |
| SRR9715740 | Leaf | 10.309 |
| SRR9715741 | Leaf | 6.594 |
| SRR9715739 | Root | 1.720 |
| SRR9715742 | Root | 2.707 |
| SRR9715743 | Root | 1.729 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 32.972 |
| SRR8749028 | MeJA induced 9h | 14.784 |
| SRR8749029 | MeJA induced 9h | 21.990 |
| SRR8749030 | Uninduced | 9.290 |
| SRR8749031 | Uninduced | 8.426 |
| SRR8749032 | Uninduced | 12.532 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.197 |
| SRR8400027 | Control - Root | 4.096 |