Gene detail information of Glyur003115s00040371 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G14020.1 | 8.00E-110 | Endosomal targeting BRO1-like domain-containing protein |
| NR | XP_003624428.1 | 0 | BRO1 domain-containing protein BROX [Medicago truncatula] |
| trEMBL | tr|G7KW46|G7KW46_MEDTR | 0 | Endosomal targeting BRO1-like domain protein {ECO:0000313|EMBL:AES80646.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03115 | 862 | 4849 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003115s00040371.1 | PF03097.13 | BRO1 | 154 | 299 | 3.30E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.701 |
| SRR1783600 | control | 3.660 |
| SRR1783602 | moderate drought stress | 1.706 |
| SRR1811619 | moderate drought stress | 1.821 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.552 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.276 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.022 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.040 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.007 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.053 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.796 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.663 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.912 |
| SRR2868004 | Drought Stress (root) | 10.630 |
| SRR2967015 | Control (root) | 10.814 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.650 |
| SRR9715740 | Leaf | 2.155 |
| SRR9715741 | Leaf | 1.951 |
| SRR9715739 | Root | 1.857 |
| SRR9715742 | Root | 4.117 |
| SRR9715743 | Root | 4.255 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.253 |
| SRR8749028 | MeJA induced 9h | 0.405 |
| SRR8749029 | MeJA induced 9h | 2.264 |
| SRR8749030 | Uninduced | 0.024 |
| SRR8749031 | Uninduced | 0.325 |
| SRR8749032 | Uninduced | 0.182 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.469 |
| SRR8400027 | Control - Root | 1.975 |