Gene detail information of Glyur003114s00040695 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G44575.1 | 4.00E-39 | Chlorophyll A-B binding family protein |
| NR | AFK43146.1 | 1.15E-126 | unknown [Lotus japonicus] |
| Swissprot | tr|Q02060|PSBS_SPIOL | 2.00E-105 | Photosystem II 22 kDa protein, chloroplastic (Precursor) |
| trEMBL | tr|I3SSA4|I3SSA4_LOTJA | 4.00E-127 | Uncharacterized protein {ECO:0000313|EMBL:AFK43146.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03114 | 3119 | 7581 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.592 |
| SRR1783600 | control | 0.627 |
| SRR1783602 | moderate drought stress | 0.085 |
| SRR1811619 | moderate drought stress | 0.084 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.383 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.242 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.661 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.645 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.131 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.246 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1587.653 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1580.514 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 22.095 |
| SRR2868004 | Drought Stress (root) | 15.224 |
| SRR2967015 | Control (root) | 6.776 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 720.941 |
| SRR9715740 | Leaf | 1161.726 |
| SRR9715741 | Leaf | 552.147 |
| SRR9715739 | Root | 0.086 |
| SRR9715742 | Root | 0.580 |
| SRR9715743 | Root | 0.764 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.033 |
| SRR8749028 | MeJA induced 9h | 0.050 |
| SRR8749029 | MeJA induced 9h | 0.179 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.320 |
| SRR8400027 | Control - Root | 1.245 |