Gene detail

Gene detail information of Glyur003111s00038646

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G16310.1	1.00E-144	Cation efflux family protein
NR	XP_003532918.1	0	PREDICTED: metal tolerance protein 10-like [Glycine max]
COG	NP_579102.1	2.00E-21	cation transporter [Pyrococcus furiosus DSM 3638]
Swissprot	tr\|Q0WU02\|MTP10_ARATH	2.00E-179	Metal tolerance protein 10
trEMBL	tr\|I1KTX5\|I1KTX5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G17570.1}

Sequence

Transcript Sequence

>Glyur003111s00038646.1
ATGGCTGAGAGTGGTGGTGTACACGGCAGAAGGCAACCGCTTCTGGTTACGCCGGAGGAAGAAGGTGGTCCAAACGCTTCTTCTTCGTGGAGACTCAATGTGAAGGAGTTTCATCTACCAACCCAAACTACTGTCACTGATCAACCACACCAACGTTCCTCCTTCAGTTTCAATGGCCTTCTCCGCAAGCCCAGGAAGCAACGCAAGGTGGATGAATATTACAAGAAACAGGAGAGACTCCTTGAAGGATTTAGTGAGATGGAGACTATGGCCGAAACCGGTTTTTTCCCGGGCAGTCTCACTGAGGATGAATTGAAGCAACTGGCAAAGAGTGAGAGGCTGGCAGTTCATGTGTCAAACATGTGTAACTTGGTGCTGTTTGCGGCAAAGGTTTTCGCCTCNATCGAGAGCAGATCGTTGGCAGTCATTGCCTCAACCTTGGATTCTCTGTTGGACCTCTTGTCAGGGTTCATATTGTGGTTTACTGCACATGCCATGAAAAAGCCAAACCGATATTACTATCCGATCGGAAAGATGCGCATGCAGCCAGTGGTTAAGCCTGAAATGGATCCGGTAAAGGTGAATTGGATGATCGGGATTATGATATTTGTGACTCTGGTGAAGTTCATTCTCATGGTCTACTGTCGAAGATTTAAGAACGAAATCGTCAGAGCATATGCACAAGATCATTTCTTTGATGTCATTACTAATTCCGTTGGATTAGCTGCTGCTGTGCTAGCTGTCAAGATCAAGTGGTGGATTGATCCAACAGGAGCTATTATTATTGCATTGTATACAATTAACACATGGGCAAAGACAGTGATTGAGAATGTTTGGTCACTGATTGGAAGGACAGCACCACCTGAATTCTTGGCAAAGCTAACATACCTCGTATGGAACCACCATGAAGAGATCAAGCACATAGACACGGTTAGAGCATACACCTTTGGTGCACACTACTTTGTGGAAGTGGACATTGTTTTGCCAGAAGACATGCTCCTTAACAAAGCACACAACATTGGTGAGACACTCCAAGAGAAGCTGGAGCAACTTCCTGAGGTTGAGAGGGCTTTTGTGCACATTGATTTTGAGTTCACTCATAGGCCCGAGCACAAGACTATGGTATGAATTGATGATGCCATTATGGCACGATGGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03111	4396	7897	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006812 cation transport

GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0008324 cation transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003111s00038646.1	PF01545.16	Cation_efflux	122	185	6.70E-08
Glyur003111s00038646.1	PF01545.16	Cation_efflux	195	365	1.20E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.132
SRR1783600	control	1.087
SRR1783602	moderate drought stress	1.225
SRR1811619	moderate drought stress	1.121

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.280
DRR006520	Root Summer glycyrrhizin high producing strain	0.276
DRR006521	Root Winter glycyrrhizin high producing strain	0.095
DRR006522	Root Winter glycyrrhizin high producing strain	0.093
DRR006523	Root Summer glycyrrhizin low producing strain	0.589
DRR006524	Root Summer glycyrrhizin low producing strain	0.565
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.629
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.753

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.148
SRR2868004	Drought Stress (root)	5.427
SRR2967015	Control (root)	6.095

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.865
SRR9715740	Leaf	6.670
SRR9715741	Leaf	6.936
SRR9715739	Root	1.476
SRR9715742	Root	2.050
SRR9715743	Root	1.404

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.167
SRR8749028	MeJA induced 9h	0.116
SRR8749029	MeJA induced 9h	0.131
SRR8749030	Uninduced	0.110
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.395
SRR8400027	Control - Root	3.582