Gene detail information of Glyur003111s00038645 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G51690.1 | 2.00E-08 | PIF1 helicase |
| NR | XP_006298995.1 | 1.75E-16 | hypothetical protein CARUB_v10015121mg [Capsella rubella] |
| trEMBL | tr|R0I659|R0I659_9BRAS | 7.00E-17 | Uncharacterized protein {ECO:0000313|EMBL:EOA31893.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03111 | 426 | 3682 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003111s00038645.1 | PF02721.9 | DUF223 | 36 | 86 | 3.30E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.464 |
| SRR1783600 | control | 1.390 |
| SRR1783602 | moderate drought stress | 1.501 |
| SRR1811619 | moderate drought stress | 0.930 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.221 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.043 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.607 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.706 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.282 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.759 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.082 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.248 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.108 |
| SRR2868004 | Drought Stress (root) | 1.596 |
| SRR2967015 | Control (root) | 0.612 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.082 |
| SRR9715740 | Leaf | 1.646 |
| SRR9715741 | Leaf | 2.656 |
| SRR9715739 | Root | 1.018 |
| SRR9715742 | Root | 2.672 |
| SRR9715743 | Root | 3.699 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.691 |
| SRR8400027 | Control - Root | 3.311 |