Gene detail information of Glyur003108s00034241 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G12620.1 | 9.00E-31 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | KHN24441.1 | 1.80E-68 | Putative pentatricopeptide repeat-containing protein, mitochondrial, partial [Glycine soja] |
| Swissprot | tr|Q9ASZ8|PPR37_ARATH | 1.00E-34 | Pentatricopeptide repeat-containing protein At1g12620 |
| trEMBL | tr|A0A072UVT5|A0A072UVT5_MEDTR | 1.00E-67 | Pentatricopeptide (PPR) repeat protein {ECO:0000313|EMBL:KEH33919.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03108 | 25912 | 27706 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003108s00034241.1 | PF13041.1 | PPR_2 | 15 | 63 | 8.70E-17 |
| Glyur003108s00034241.1 | PF01535.15 | PPR | 88 | 117 | 0.27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.403 |
| SRR1783600 | control | 1.428 |
| SRR1783602 | moderate drought stress | 1.098 |
| SRR1811619 | moderate drought stress | 1.167 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.514 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.210 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.863 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.877 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.988 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.667 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.269 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.866 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.981 |
| SRR2868004 | Drought Stress (root) | 4.206 |
| SRR2967015 | Control (root) | 4.109 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.072 |
| SRR9715740 | Leaf | 2.001 |
| SRR9715741 | Leaf | 2.506 |
| SRR9715739 | Root | 0.452 |
| SRR9715742 | Root | 1.435 |
| SRR9715743 | Root | 1.741 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.248 |
| SRR8749028 | MeJA induced 9h | 7.044 |
| SRR8749029 | MeJA induced 9h | 3.703 |
| SRR8749030 | Uninduced | 4.167 |
| SRR8749031 | Uninduced | 2.883 |
| SRR8749032 | Uninduced | 2.148 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.461 |
| SRR8400027 | Control - Root | 4.394 |