Gene detail information of Glyur003108s00034238 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G40610.1 | 1.00E-102 | expansin A8 |
| NR | NP_001265970.1 | 3.54E-176 | expansin-A8-like precursor [Cicer arietinum] |
| Swissprot | tr|O22874|EXPA8_ARATH | 6.00E-148 | Expansin-A8 (Precursor) |
| trEMBL | tr|Q9FNT0|Q9FNT0_CICAR | 1.00E-176 | Alpha-expansin {ECO:0000313|EMBL:CAC19184.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03108 | 14693 | 16927 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003108s00034238.1 | PF03330.13 | DPBB_1 | 73 | 156 | 3.60E-25 |
| Glyur003108s00034238.1 | PF01357.16 | Pollen_allerg_1 | 169 | 246 | 3.40E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.034 |
| SRR1783600 | control | 0.035 |
| SRR1783602 | moderate drought stress | 0.036 |
| SRR1811619 | moderate drought stress | 0.035 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.421 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.050 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 41.825 |
| SRR2868004 | Drought Stress (root) | 55.603 |
| SRR2967015 | Control (root) | 36.567 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 64.509 |
| SRR9715740 | Leaf | 4.353 |
| SRR9715741 | Leaf | 26.727 |
| SRR9715739 | Root | 0.281 |
| SRR9715742 | Root | 1.340 |
| SRR9715743 | Root | 1.613 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.060 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.711 |
| SRR8400027 | Control - Root | 2.634 |