Gene detail

Gene detail information of Glyur003107s00034860

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G28680.1	2.00E-157	RmlC-like cupins superfamily protein
NR	NP_001241090.1	0	uncharacterized protein LOC100795038 [Glycine max]
Swissprot	tr\|P14614\|GLUB4_ORYSJ	2.00E-34	Glutelin type-B 4 basic chain (Precursor)
trEMBL	tr\|C6TGN6\|C6TGN6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G04710.1}

Sequence

Transcript Sequence

>Glyur003107s00034860.1
TGACATTCAAATTGAACATTTTTATCCCTTGTTATTTTTTTAAAAAAACACAGTTAAATTAATCCTATCTGACTCAATTGATATTGGACGGTGACGAGTGTTAGTAGCGGATCGTACACTGTACTACGTTCTCAACAGAACCTACAGTTACGGTTTCAGTGGGATTCATTCAAAACTCTCCACTGCTCCTATANATAGACCACACCACACATGCTGTGGAAAAAAACGAAAAGGGCTTGTGTTTTGTGATCTTTGCTTTGATTATCTTTGCTGTTTGGTGTGATCTTTTTGCCTTTGTTGATATGGATATTGATCTTTCTCCCCAGTTGGCCAAGAAGGTGTACGGAGGCAATGGTGGGTCTTATTATGCCTGGTCCCCTTCGGAGCTTCCCATGTTGCGTGAGGGCAACATTGGTGCTTCCAAGCTAGCTCTTGAGAAGAATGGTTTTGCCCTTCCTCGCTACTCTGATTCTTCNAAGGTTGCATACGTTCTGCAAGGAAGTGGAGTTGCTGGAATTGTGCTCCCTGAATCAGAAGAGAAGGTTGTTGCAATTAAGAAGGGTGATGCCTTGGCACTCCCTTTTGGTGCCGTGACATGGTGGTTCAACAAGGAGGAAACTGAATTGGTTGTTCTGTTCCTGGGAGATACTTCAAAAGCTCACAAGGCCGGTGAGTTCACTGATTTCTTCCTGACCGGTTCCAACGGAATCTTCACCGGATTCTCAACCGAGTTTGTGGGGAGAGCATGGGACTTGGAAGAGAAGGACGTGAAGGCCCTTGTTGGGAAACAACCAGGCAAGGGAATTGTGAAGGTTGAGGGAAACATTACCCTTCCTCAGCCCAAAGAGGAACATAGGAAAGGAATGGCCTTGAACTGTGAAGAGGCTCCATTGGATGTTGACANTAAGAATGGTGGAAGGGTTGTGGTGTTGAACACCAAGAACCTTCCCTTGGTTGGTGAGGTTGGTCTTGGTGCAGACCTTGTGAGGCTTGATGGGAAAGCCATGTGCTCCCCTGGATTCTCTTGTGACTCTGCCTTGCAGGTTACTTACATTGTCAGGGGAAGTGGCCGTGTTCAGGTTGTTGGTGTCGATGGCCGTAGGGTTCTAGAGACAACTATCAAGGCTGGTAATTTGTTCATTGTGCCAAGGTTCTTTGTTGTCTCCAAGATTGCTGACCCTGATGGAATGGAATGGTTCTCTATCATCACTACCCCTAATCCTATATTTACTCACCTGGCTGGAAGCTCTTCGGTGTGGAAGGCTTTATCACCTACTGTTCTGCAAGCTGCTTTCAATGTGGATGCAGGAGTTGAGCAACTCTTCCGTTCAAAGAGGACTGCTGATGCCATTTTCTTCCCTCCTCCAAATTAGAGTAGAGTAGATAGCTTGTGAAGATTCACCCCCATTCCCTCTCTCCCATCCCATAAGACAGAAAAGCAAGCTTTACAAGCCATTGAAAATTATCTTTATCCAGTTGTTTGGATTTGTTTTAAGTTTTTTTAAGGTTTTTAATGAAGTACT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03107	26117	28883	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0045735 nutrient reservoir activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003107s00034860.1	PF00190.17	Cupin_1	11	133	4.70E-24
Glyur003107s00034860.1	PF00190.17	Cupin_1	201	336	3.00E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	23.094
SRR1783600	control	22.933
SRR1783602	moderate drought stress	14.355
SRR1811619	moderate drought stress	14.286

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	25.033
DRR006520	Root Summer glycyrrhizin high producing strain	24.546
DRR006521	Root Winter glycyrrhizin high producing strain	6.316
DRR006522	Root Winter glycyrrhizin high producing strain	6.055
DRR006523	Root Summer glycyrrhizin low producing strain	34.648
DRR006524	Root Summer glycyrrhizin low producing strain	35.732
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.684
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.525

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.471
SRR2868004	Drought Stress (root)	12.564
SRR2967015	Control (root)	10.856

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.740
SRR9715740	Leaf	2.264
SRR9715741	Leaf	1.295
SRR9715739	Root	51.152
SRR9715742	Root	18.459
SRR9715743	Root	26.311

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.640
SRR8749028	MeJA induced 9h	4.142
SRR8749029	MeJA induced 9h	9.316
SRR8749030	Uninduced	4.590
SRR8749031	Uninduced	2.558
SRR8749032	Uninduced	4.497

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.374
SRR8400027	Control - Root	38.409