Gene detail

Gene detail information of Glyur003107s00034857

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G07745.1	2.00E-84	homolog of RAD51 D
NR	XP_004505898.1	0	PREDICTED: DNA repair protein RAD51 homolog 4-like isoform X1 [Cicer arietinum]
COG	YP_007311318.1	8.00E-12	DNA repair and recombination protein RadB [Natronococcus occultus SP4]
Swissprot	tr\|Q9LQQ2\|RA51D_ARATH	1.00E-119	DNA repair protein RAD51 homolog 4
trEMBL	tr\|A0A072UK69\|A0A072UK69_MEDTR	0	DNA repair protein RAD51 {ECO:0000313\|EMBL:KEH30102.1}

Sequence

Transcript Sequence

>Glyur003107s00034857.1
TGCATTGAGAGAAAATGGCGCCGTTGAAATCCCTGGAGAAAGAGTATCCGCTTGTTGACTCTAACTTCCAAAGCTTTTGCGCTTCCCACGGCATTTTCTCTGTTGAAGATTTCCTCCTGCATGATCTCGATGCATTATTCGCCTTTGCCGCTAATCACTCCACTTCGCAGAGACTGACTCAGGGAATTCATCAACTTCTCTCAATAATAGATGCTCTACACCCACCATTGCTAAACGGTTTGCAGCTCCTGGAAGATGCTAAGCGGAATAAACATGCTTTGTCCACTGGATGTGAAGGGATTGATGCATTGCTTGGAGGTGGATTACGTGAAGGACAATTAACTGAACTTGTTGGGCCATCCTCGTCCGGTAAGACACAGGGAGATGTTTATGGACAGTATCTGCAGGTTTGCCTGCTGTCTGCCTCAACTACTGCAAAGCATAAGAGTTCAGTTATATACTTAGATACCGGCAACTCATTTTCACCTCAGCNTATTGCACATTTTGTTGGTCAGTCCTCTGATTACGTCTCGCACAATCAGGATGATCGTAGATCTCTCCAAAAGGTNTTGGACAGGATAATTTGCTACTCGGTGTTTGACATATATCAGATGTTTGATGTGCTGCATCAACTNAAGATCAATTTGAGATCTGAGATTGTTAGATCAGATCATGTTCAACTGCTTATCGTTGATTCAATCTCTTCACTGATTACCCCCATCCTTGGGGGCAGTGGTCCTCAGGGACATGCTTTAATGATATCTGCTGGGTTTTTACTGAAGAAGTTAGCACATGAGCATAATATTGCAGTATTGGTAAGTTTTGCTTTTGTAACGAATCATGTGGTGGGTGGAGAAGACGGTACTTCCAAACCAGCACTTGGAGAGAGTTGGAAGAGTGTCCCTCATGTACGGCTCTTGCTTTCTTGTGATTGTGGAAGCAATATCTGCAATATTTCAATAATAAAACATCCATCTATGGCTTCTGGTAGGACTGCAAGTTCTAGCCGGCTGTTTGTCTGAAATTGTTCTCACCACAAACTGGCGCTTCATCAAAGGAAATAATAGTTGCTTTTAATAGANGTGTATGGAGAAGCGTGTTTTTGTTGCTGATGTCTCGCAGAAAATAGTAACTAAACCAAACATGCTATATAGGGTACGTATTTATTTCTAAGAATGCATTCAAAATTAGATATTCTTCGTATTTTCTAATATAGCTAATACAAGTACTTATTTGTTGATGACATTTGCTATGGCAGTGCTTAATTATGAAAGACTAGTATATAAAATTATTTGCTTTAAGAATAACACGTAAATATTCCAAAATTCTATTAAGGTTGTGCTCCCATGAATCCTATCNCGTAAATGAATGTGTGAAATGTGAATTATAATCCAGTATCTTATTAAAAGAGAGGATATTATGTTCATAAGATTTTGTCAAAATGAAAATCAACTATAGCTAGTGAGAGAAAACGTACGTGAGATTTGATCAGCATACCCTAGACTGCACATGCTTTTTTTGGCATGATCAATGGTGGGGAACTGCCGACAATGGTAGATGTGGACGAATTTGAAATGCTTGCTAACAAAATGTAACATATGAACTAAAATAATTGACAATTTATATTTTTCAAAATATTTTTGTTAATTTCTTAATTTCTGGGACCAAGTTGCTAGTGCATGTGCATTACTCCCTCCGGTCTCAAATATAAGAAAAAAAGTACATGCATCTTGATCATATTTAGTCCAGATGTATGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03107	7199	12321	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006281 DNA repair

molecular_function

GO:0003677 DNA binding

GO:0005524 ATP binding

GO:0008094 DNA-dependent ATPase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003107s00034857.1	PF08423.6	Rad51	83	296	7.70E-16
Glyur003107s00034857.2	PF08423.6	Rad51	83	163	1.50E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.009
SRR1783600	control	4.989
SRR1783602	moderate drought stress	5.518
SRR1811619	moderate drought stress	5.503

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.449
DRR006520	Root Summer glycyrrhizin high producing strain	2.254
DRR006521	Root Winter glycyrrhizin high producing strain	0.768
DRR006522	Root Winter glycyrrhizin high producing strain	0.598
DRR006523	Root Summer glycyrrhizin low producing strain	2.762
DRR006524	Root Summer glycyrrhizin low producing strain	2.736
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.499
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.545

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.597
SRR2868004	Drought Stress (root)	7.191
SRR2967015	Control (root)	6.255

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.504
SRR9715740	Leaf	1.538
SRR9715741	Leaf	2.358
SRR9715739	Root	1.484
SRR9715742	Root	1.675
SRR9715743	Root	2.165

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.476
SRR8749028	MeJA induced 9h	10.025
SRR8749029	MeJA induced 9h	11.653
SRR8749030	Uninduced	3.958
SRR8749031	Uninduced	2.348
SRR8749032	Uninduced	3.183

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.096
SRR8400027	Control - Root	9.248