Gene detail

Gene detail information of Glyur003107s00034856

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G45560.1	4.00E-50	cytochrome P450, family 76, subfamily C, polypeptide 1
NR	P93149.2	5.30E-144	RecName: Full=Licodione synthase; AltName: Full=(2S)-flavanone 2-hydroxylase; AltName: Full=CYP GE-5; AltName: Full=Cytochrome P450 93B1; AltName: Full=Flavone synthase II [Glycyrrhiza echinata]
COG	YP_003950164.1	2.00E-27	cytochrome p450 [Stigmatella aurantiaca DW4/3-1]
Swissprot	tr\|P93149\|C93B1_GLYEC	2.00E-146	Licodione synthase
trEMBL	tr\|Q9MBE8\|Q9MBE8_GLYEC	2.00E-141	Cytochrome P450 {ECO:0000313\|EMBL:BAA74466.1}

Sequence

Transcript Sequence

>Glyur003107s00034856.1
ATGACTTTGAATATGCCATGTGTTTCGCAGGATTTCTTCACTGCAGGGACGGANACCACAGCGATTTCAACAGAGTGGGCATTAGTGGAGCTCGTCAAGAAACCCTCCTTGCTACAAAAAGTNCGTGAAGAGATAGACAATGTCGTAGGAAAAGACAGACTTGTTGAGGAATCTGATTGTCCCAATCTCCCATATCTCCAAGCCATTCTTAAAGAAACATTCCGTTTGCACCCACCGGTTCCTATGGTTACAAGAAGATGCGTGGCAGAGTGCAGGGTAGAGAATTACGTCATCCCAGAAGACTCACTTCTCTTTGTGAATGTTTGGTCCATTGGGAGAAACCCAAACTTTTGGGACAACCCATTGGAGTTTCGCCCCGAACGATTCTTAAAACTAGAAGGAGATTCCAGTGGAGCTATTGATGTGAGGGGAAGCCATTTTCAGCTTCTGCCATTTGGGTCTGGAAGGAGGATGTGTCCTGGTGTGTCCTTGGCTATGCAAGAGGTGCCAGCACTAATTGGTGCTATAATCCAGTGCTTTGATTTCCACGTTGTGGGTCCCAAAGGTGAGATTTTGAAGGGTGAGGATATAGTCATTAATGTGGATGAAAGGCCAGGATTGACGGCTCCAAGGGCTCATAACCTTGTGTGTGTTCCCGTTGAAAGGACAAGTGGCGAGATAGACAACGTAGTAGGGAATAATAGACTAGTTGAGGAATCTGACTATCCCAACCTTCCTTATCTCCAAGCCATTATGAAGGAAACATTCCGTTTGCACCCACCGGTTCCTATGGTTACAAGAAGATGTGTGACAGAGTGCAGGATTGAGAATTACGTCATCCCAGAGAACACACTACTCTTTGTGAATGTTTGGTCCATTGGAAGAAACCCAAACTATTGGGACAACCCATTGGTGTTTCGCCCCGAACGATTCTTAAAGCTCGAAGAAGGAGATTCTAGTGGAGTCATTGATATAAGGGGGCAGCATTTTCAGCTTCTGCCATTTGGGTCTGGGAGGAGGATGTGCCCTGGTGTGTCCTTGGCNATGCAAGAGGTGCCAGCACTTCTTGGTGCTATTATCCAGTGCTTTGATTTCCAGGTTGTGGGTNCCAAAGGTGAGATTTTGAAGGGTGATGACATAGTCAATATTGANGTGGATGAAAGGCCAGGATTGACAGCTCCAAGGGCCCACGAGTTGGTGTGTGTTCCCGTTGAAAGGACCAGCTGTGGACCCCTTAAAATCCTTGGATGTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03107	168	7020	+

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP76C1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003107s00034856.1	PF00067.17	p450	10	186	1.40E-59
Glyur003107s00034856.1	PF00067.17	p450	224	369	2.00E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	51.093
SRR1783600	control	49.921
SRR1783602	moderate drought stress	32.356
SRR1811619	moderate drought stress	32.262

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.278
DRR006520	Root Summer glycyrrhizin high producing strain	6.132
DRR006521	Root Winter glycyrrhizin high producing strain	0.177
DRR006522	Root Winter glycyrrhizin high producing strain	0.173
DRR006523	Root Summer glycyrrhizin low producing strain	3.568
DRR006524	Root Summer glycyrrhizin low producing strain	3.588
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.680
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.713

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	65.556
SRR2868004	Drought Stress (root)	202.811
SRR2967015	Control (root)	163.285

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.272
SRR9715740	Leaf	0.519
SRR9715741	Leaf	1.618
SRR9715739	Root	78.725
SRR9715742	Root	38.038
SRR9715743	Root	49.400

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.552
SRR8749028	MeJA induced 9h	8.445
SRR8749029	MeJA induced 9h	4.528
SRR8749030	Uninduced	125.627
SRR8749031	Uninduced	222.263
SRR8749032	Uninduced	67.180

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	174.423
SRR8400027	Control - Root	157.579