Gene detail

Gene detail information of Glyur003091s00037488

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G19010.1	0	AMP-dependent synthetase and ligase family protein
NR	KHN40402.1	0	4-coumarate--CoA ligase-like 6 [Glycine soja]
COG	YP_007042205.1	3.00E-103	putative 4-coumarate-CoA ligase 3 [Saccharothrix espanaensis DSM 44229]
Swissprot	tr\|Q84P24\|4CLL6_ARATH	0	4-coumarate--CoA ligase-like 6
trEMBL	tr\|I1J4L4\|I1J4L4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G01350.1}

Sequence

Transcript Sequence

>Glyur003091s00037488.1
CATTCTCCCTTTTGTTTTTTTAATATTCCTTTTTTTCTTAACGCCACACATTCCANTCCACAGTCTATTCCGATTTCTGAACATGATCATTGATGTATGGCCAGTTGCTTCACTCTCAAGTGAACCACTCAACTCAAATGTAAAGTAAACAAAAACACAAACACCCTTTTGCTGTTTGTTTCCCNTTCATGCCTCATTCTTCATCATAATTGCATTGCACTTCACATTTGCATTTGCTCCATTCTCTTCTTTTTCTCTTCTGAATCAATTCAATGGCCTCAAACCTCAACTGCGACATGCCCCAAAGCACCACCCTCATTCACCCTCCTTGGTACTCACCAAAAACCGGAATTTACCACGGCACACACGCTCCTTTGAACCTTCCCACCGACCCATTTCTCGACCTTGTTTCCTTCATTTTCTCTCACCCACATAATGGGGTTTCAGCCCTCGTTGATTCTTCATCTGGGTGTTCCATTTCTTACTCAAAGTTGTTACCTTTGGTCCAATCCATGGCTTCTGGTCTTCACAACTTGGGTGTTTCACAAGGTGACGTCGTTTTGCTTCTACTTCCAAATTCCATTTACTACCCCATTGTGTTCCTGGGTGTTCTGTATCTAGGTGCTGTTGTTACACCCTTGAATCCTCTCAGTAGTATCTATGAAATTCGTAGGCAGATTACCGAGTGTGGTGTGAGTTTGGCCTTTACTGTGCCTGAGAATGTAAAGAAACTAGAACCATTTGCCATTCCCATCATTGCTGTGCCAGAAAATGANAAGGGTTTGAAGCATAGTTGTTTCTCATGTTTTTGTAACATGGTTTCTGGTAACTTTGATTTGCCTCAAAGACCAGTTATTAAACAGGAAGACACTGCGGGTATATTGTACTCTTCAGGGACTACTGGGGTGAGCAAAGGAGTTGTTCTAACCCATAAAAATCTCATTGCTATGGTTGAGCTTTTTGTGAGGTTTGAAGCTTCTCAATATAAGTACTCTTGCTTGGAGAATGTGTTTCTAGCTGTTTTGCCAATGTTCCATATATATGGTTTATCGCTCTTCGCTATGGGATTACTGTCGTTGGGTTCTACAGTCATTGTAATGAGGAAATTTGACATNGATGAGGTTATTACGGTGATCGATAAATATAGAGTCACACACTTCCCTGTTGTTCCACCAATGTTGTCAGCATTGACAGCAAAGGCAAAGNGTATTGATGGAAGTAAATTGCAGAGTTTGATACAGGTCTCCAGTGGCGCAGCGCCTTTGTGCACAGGAGTTATCAATGATTTTGTCCAAACATTCCCTAATGTTGATCTTATACAGGGTTATGGAATGACTGAGTCGACTGCAGTAGGAACACGTGGCTTCAATACTGAAAAGTTTCGCAACTATTCTTCAATAGGGTTGCTAGCTCCAAACATGGAGGCAAAAGTGGTAGACTGGAACAGTGGTGCATTTTTGCCCCCAGGCAGCAGCGGATACTTGAATAACGAGGAAGCCACAATGTCAACAATTGATAAAAATGGTTGGCTACATACTGGAGATGTTGTTTATTTTGATCAGGATGGGTATTTACATATATCTGACCGCTTGAAAGATATTATCAAGTACAAGGGCTTTCAGATTGCTCCTGCTGATTTAGAAGCTGTGTTAATTTTGCATCCTGAAATAGTTGATGTAGCTGTTACAGCTGTCATGGATGAAGAAACTGGGGAGATGCCAGTGGCATTTGTGGTCAAGAAGGTTGGAAGTGTACTTTCTCCAAAGCATATCATGGATTACGTTGCTGAGCAGGTTGCTCCGTACAAGAAGGTTAGGAAAGTGGTCTTCATTGACAAGATACCAAGGTCTGCCACTGGGAAGATCCTTCGAAAGCAGCTTAAGAATTGCTTGACTTCTAAACTCTAAGGCATTTTTTTTGGACATATCTAGAGAGTAATTAATACTGAAAAGTTACCAAAGTTGATTTTGACTAGTGGGTTACATCAACCCGAATTTTGTTGACTATGATTTGTAGTTACATGCATCATGGGGGCTATTAAAGCAATGAAGAACATTGTGTCCTGAAATGTTTGTTACCAGAAATTTATGTCCTGCATATCTCATCCCTTCTATTAAGAGATCATTGTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03091	25009	29546	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01904	4CL	EC:6.2.1.12	Phenylalanine metabolism	map00360
			Ubiquinone and other terpenoid-quinone biosynthesis	map00130
			Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003091s00037488.1	PF00501.23	AMP-binding	59	446	1.60E-82
Glyur003091s00037488.1	PF13193.1	AMP-binding_C	456	530	4.40E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.524
SRR1783600	control	0.565
SRR1783602	moderate drought stress	0.209
SRR1811619	moderate drought stress	0.209

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.345
DRR006520	Root Summer glycyrrhizin high producing strain	1.295
DRR006521	Root Winter glycyrrhizin high producing strain	1.242
DRR006522	Root Winter glycyrrhizin high producing strain	1.241
DRR006523	Root Summer glycyrrhizin low producing strain	0.832
DRR006524	Root Summer glycyrrhizin low producing strain	0.805
DRR006525	Leaf Summer glycyrrhizin high producing strain	36.195
DRR006526	Leaf Summer glycyrrhizin high producing strain	35.980

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.316
SRR2868004	Drought Stress (root)	0.759
SRR2967015	Control (root)	0.761

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	32.080
SRR9715740	Leaf	48.832
SRR9715741	Leaf	28.075
SRR9715739	Root	0.035
SRR9715742	Root	0.141
SRR9715743	Root	0.086

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.372
SRR8749028	MeJA induced 9h	5.956
SRR8749029	MeJA induced 9h	4.832
SRR8749030	Uninduced	0.202
SRR8749031	Uninduced	1.020
SRR8749032	Uninduced	0.559

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.720
SRR8400027	Control - Root	1.433