Gene detail

Gene detail information of Glyur003091s00037484

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G45580.1	3.00E-61	Homeodomain-like superfamily protein
NR	AES95614.2	9.48E-153	myb-like transcription factor family protein [Medicago truncatula]
Swissprot	tr\|Q9SAK5\|APL_ARATH	6.00E-51	Myb family transcription factor APL
trEMBL	tr\|G7K874\|G7K874_MEDTR	4.00E-153	Myb-like transcription factor family protein {ECO:0000313\|EMBL:AES95614.2}

Sequence

Transcript Sequence

>Glyur003091s00037484.1
CAACGGTGACATATAGTATATTATTAGAACTTGCGTGACAATAATTTGAATCACTGTTGTCACACAAGAATTATAGTATATATAAGTCCATCCAACGCCGTATTTGACGCTTTTTGTTTTTGTTGCTTCTCACGCTATTGAAGCCATCTTTTCTTCTTTTATTCTTACTTTTTTCACAAAAACACCACTCCTCTGTTTTCGTCTAATAATCCATGATGTTGTTCTGTTTCTCTGACCTGTTTGGTTTGTGGTTTAATTCCAATTCCAATTCCAATAGGTTATGATTACTATCGGAGTCTCGTGGAATTACAGATTCTGCCATTTCCACTAGCAAAAAACATCGTCACTTGTTGCAGAGGGTATAATATAAGAGTATAAACTTGTACTGTTCTACACCCCCATCCTCTTAAAGACCTTGTCTTTTTTACTTTCCTTTCCGACCCACTTTTTCTTCTTTGCTGCTTCTGGGAGGTGCTGTTTGGGTGAGAGGTACAGAGCAAAAAGCTGCNAGTGGGGTTCATTCGAATTAATTTGCTTGTTGAAAGTTGAAAGTTGAAGAGAGAGTGATGGAGAGTGGAGGTGGGAGAGGAAGAGGAGGAGGGTATGAAGGNGGGGTGGTGATGACGATGACAAGAGACCCAAAGCCGAGGCTGAGGTGGACAGCTGATCTTCATGACCGGTTCATCGATGCTGTCACAAAGCTTGGTGGCCCTGACAAGGCGACTCCCAAGTCTGTTCTGAGGTTAATGGGCTTGAAAGGTCTGACATTGTATCATTTGAAGAGCCATTTACAGAAGTATAGACTTGGACAGCAGGCTCAAAAACACAATGAAGAACATTACAAAGAGACTAATAGATGTTCATATGTAAATTTCAGTAACTGTTCTTCAGGGCCAAGTACCAGTTACGGAGGGGATAATGAAATGGGAGAAATCCCAATAGCAGAAGCACTGAGGCATCAAATTGAAGTTCAAAAGAGATTGGAAGAGCAGCTGGAGGTACAGAAGAAATTGCAGATGAGAATAGAGGCCCAAGGGAAGTATTTGCAGGCTGTGTTAGAGAAAGCACAGAGGAGCCTTTCCCTGGATGGACCAGGCAGTCTTGAAGCATCAAAAGCTAAATTGACTGAATTCAACTCAGCTTTTTCAAATTTCATGGAAATTATGAACAAAGATGGTAAAGAAAACATACTAGTCATGAATGAATTTTATAATAAGAACCATAGCTCAGCTTTCCATTATCAAGAAGAAAATAAGGAATTAAAGCCTCAGGTTGAAGGGGGTTCAAATTCAATACAGCTAGACTTAAACGTCAAAGGTAGCAATGACCTTGTATCTGCTGATGGAGCTGAAATGGAATCCAAGATGCTTTCATATAGGGTATACAATTTTTGAATTTATTATATGTTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03091	2109	6211	-

Gene family

Gene family	subfamily
Transcription Factors Family	G2-like

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003091s00037484.1	PF00249.26	Myb_DNA-binding	28	79	1.10E-18
Glyur003091s00037484.1	PF14379.1	Myb_CC_LHEQLE	123	171	3.20E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.961
SRR1783600	control	7.796
SRR1783602	moderate drought stress	3.466
SRR1811619	moderate drought stress	3.389

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.947
DRR006520	Root Summer glycyrrhizin high producing strain	6.120
DRR006521	Root Winter glycyrrhizin high producing strain	3.699
DRR006522	Root Winter glycyrrhizin high producing strain	3.100
DRR006523	Root Summer glycyrrhizin low producing strain	11.344
DRR006524	Root Summer glycyrrhizin low producing strain	11.140
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.950
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.234

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.465
SRR2868004	Drought Stress (root)	6.408
SRR2967015	Control (root)	9.188

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.625
SRR9715740	Leaf	0.045
SRR9715741	Leaf	0.046
SRR9715739	Root	1.568
SRR9715742	Root	2.717
SRR9715743	Root	3.230

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.381
SRR8749028	MeJA induced 9h	25.364
SRR8749029	MeJA induced 9h	15.172
SRR8749030	Uninduced	6.960
SRR8749031	Uninduced	3.574
SRR8749032	Uninduced	1.255

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	29.045
SRR8400027	Control - Root	34.850