Gene detail information of Glyur003088s00036695 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G02140.1 | 2.00E-79 | Pathogenesis-related thaumatin superfamily protein |
| NR | XP_006575509.1 | 1.21E-147 | PREDICTED: thaumatin-like protein-like [Glycine max] |
| Swissprot | tr|Q53MB8|TLPH_ORYSJ | 6.00E-98 | Thaumatin-like protein (Precursor) |
| trEMBL | tr|I1JI08|I1JI08_SOYBN | 5.00E-148 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G41680.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03088 | 12682 | 15230 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003088s00036695.1 | PF00314.12 | Thaumatin | 29 | 237 | 6.50E-75 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.855 |
| SRR1783600 | control | 1.893 |
| SRR1783602 | moderate drought stress | 1.293 |
| SRR1811619 | moderate drought stress | 1.412 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.176 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.201 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.180 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.784 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.910 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.182 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.210 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 29.903 |
| SRR2868004 | Drought Stress (root) | 18.655 |
| SRR2967015 | Control (root) | 25.265 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.222 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.998 |
| SRR9715739 | Root | 1.741 |
| SRR9715742 | Root | 5.026 |
| SRR9715743 | Root | 3.841 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.391 |
| SRR8400027 | Control - Root | 5.537 |