Gene detail

Gene detail information of Glyur003087s00041287

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G39970.1	1.00E-62	Mitochondrial substrate carrier family protein
NR	XP_006605325.1	8.31E-173	PREDICTED: uncharacterized protein LOC100775304 isoform X1 [Glycine max]
Swissprot	tr\|O04200\|PXN_ARATH	3.00E-94	Peroxisomal nicotinamide adenine dinucleotide carrier
trEMBL	tr\|I1NCY8\|I1NCY8_SOYBN	3.00E-173	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G00730.1}

Sequence

Transcript Sequence

>Glyur003087s00041287.1
TCCATCCTTAACTAACTACCTTTAACTAACTAACAAATGAAAAGTTTCAGAATTCACGATAAGTTTATTGACAAACAAACAAAAAACCAACTGGGTTTTGCCTCCTGAGCCAGCAGCCTAGTGAACCATCTGAATTCAAGAAACTAACCACCATGTCAGAGTCAAACGCCATAGCAAACGGTTTGGCTGGTGCCGGTGGCGGTATCATTGCCCAAATAATCACTTATCCACTTCAAACGGTAAACACACGCCAGCAAACTGAGAGAACACTCAAGAAGAACAAGCAAAGTTTGCTNTCTCACTCCTCCAACACAACCACTGCTCCTCCTGCTCCTGGCACTCTTCTTCAGATCTTTCAGGGCATTTACTACTACTTCTATCAAGTTTTTAAGAACAAGGCTGTGGCAATTGCCGCTGCCCGGAAAATCAAAGGGCACGGAGATGGTACTGTTGGAATGTTTGGTTGGCTTGTCACACACACTCAAGCAGAAAGAAAAATCGTGGATGAAAAGAAAGAAGCTTTAAGGAGGGCTGCTTCTGAAAGCATCTTAGCAGGCTCAGCAGTGGAAGACAAATTGGCTGAACTGAATTCTTTAAAACCTAGACCATATGGGACTATACATGCAGCTAATGAAGTATATAATGAAGCGGGTATAGTTGGATTTTGGAAGGGTGTCATCCCTGCTCTTATTATGGTATGCAACCCATCAATCCAGTTTATGATTTATGAGAGTTCATTAAAGCATATAAGGGCAAAACGCTCTGCTAAGAAGCAGGGGGATACAAGTGTAACTGCCTTGGAGGTNTTTTTGGTGGGAGCATTAGCAAAACTTGGAGCCACTGTCTCAACATACCCCTTGCTAGTTGTCAAGTCAAGGCTTCAAGCAAAACAAGAGATTGGTGGAAGTAACTCGTTAAGATACTCAGGATTGCCTGGCTTTTATAAGGGGATGAGCACAAAGATAGTACAGAGTGTTTTTGCTGCTTCTGTACTATTCATGGTAAAGGAGGAGCTCGTTAAGGCTTTCATGGTGCTGGCAGATAAGAGCAAAAAAGTTGTATTGAATTTGAGTACTTTTGATGCGGTACTAAAAATGATTCGTTATGAAGGATTGCCTGGCTTTTATAAGGGGATGAGCACAAAGATAGTACAGAGTGTTTTTGCTGCTTCTGTACTATTCATGGTAAAGGAGGAGCTCGTTAAGGCTTTCATGGTGCTGGCAGATAAGAGCAAAAAAGTTGTATTGAATTTGAGTAGTTGACTTGACTCTCTTCTTTTTAGATATAGAAAAAGAAAGAAAACGAGTAGTTGACTTCTTTACCATATGACAGGGATGTCTCTGTGCCTCTCCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03087	14763	24394	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003087s00041287.1	PF00153.22	Mito_carr	4	49	2.10E-06
Glyur003087s00041287.1	PF00153.22	Mito_carr	149	200	1.00E-08
Glyur003087s00041287.1	PF00153.22	Mito_carr	213	292	2.20E-11
Glyur003087s00041287.1	PF00153.22	Mito_carr	288	353	3.80E-07
Glyur003087s00041287.2	PF00153.22	Mito_carr	4	50	2.30E-06
Glyur003087s00041287.2	PF00153.22	Mito_carr	149	200	8.10E-09
Glyur003087s00041287.2	PF00153.22	Mito_carr	213	305	1.00E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.684
SRR1783600	control	0.741
SRR1783602	moderate drought stress	0.606
SRR1811619	moderate drought stress	0.596

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.125
DRR006520	Root Summer glycyrrhizin high producing strain	0.890
DRR006521	Root Winter glycyrrhizin high producing strain	1.722
DRR006522	Root Winter glycyrrhizin high producing strain	1.684
DRR006523	Root Summer glycyrrhizin low producing strain	1.675
DRR006524	Root Summer glycyrrhizin low producing strain	1.434
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.670
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.391

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.421
SRR2868004	Drought Stress (root)	4.044
SRR2967015	Control (root)	3.744

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.758
SRR9715740	Leaf	20.804
SRR9715741	Leaf	11.065
SRR9715739	Root	0.342
SRR9715742	Root	0.258
SRR9715743	Root	0.404

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.084
SRR8749028	MeJA induced 9h	0.240
SRR8749029	MeJA induced 9h	0.041
SRR8749030	Uninduced	0.422
SRR8749031	Uninduced	0.202
SRR8749032	Uninduced	0.210

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.380
SRR8400027	Control - Root	1.713