Gene detail

Gene detail information of Glyur003077s00042521.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G29280.1	3.00E-44	WRKY DNA-binding protein 65
NR	KEH36643.1	1.98E-97	WRKY family transcription factor [Medicago truncatula]
Swissprot	tr\|Q9LP56\|WRK65_ARATH	6.00E-62	Probable WRKY transcription factor 65
trEMBL	tr\|A0A072V5L0\|A0A072V5L0_MEDTR	7.00E-98	WRKY family transcription factor {ECO:0000313\|EMBL:KEH36643.1}

Sequence

Transcript Sequence

>Glyur003077s00042521.1
CTTATCCTCGCGGATATTTTTTGATATAAAATAACGAGTTAAGAAACCGCAGGGTTGCTTTCAAATGACATGTACTTTCAAATAAATCGGTATTAGTTTCCGTGAGATGTGGTATTCGCCGGCACGTCCCCTAATAAACAAAGGCCGCCGCAGTGATAGCTCCACCAATTTGTCACCACACCAAGCCCCTGATTTTGAGGGCATTCCACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATCTTCCTCGCTTCGCTTGTTCATACCTTTTTGATCTATGCTCAGCTAGCCACGATCATCACCATCACCGCCACCTTGTAGTGTGATCAAGGGTCAGGATTATTCCAATCAATCACAGTTACTAACTCAAATTTCCAAGAATTGGACACAGTGGATTTACAAGTGTACGTAGCTCATATGTGAGAGTGAACAAGAAGACAATTAATATATACTGACACAGGTGATAGTGAAGAAAACATTGCTGAATCCCCCTTTAACATGGACACCTCAGTCACTTCCTCCGCTAAAAGGCGAGGGATAAAGAGAAGGGTAGTGGAAATCCCAATGAAGGAGGTGGAGAGCAGTAACACTCCACCGTCTGATTCATGGGCATGGAGAAAGTACGGCCAGAAACCCATCAAAGGTTCCCCTTATCCGAGAGGGTACTATAGGTGTAGCAGTTCAAAGAGCTGTCCGGCGAGAAAACAAGTGGAAAGGAGCCACGTGGACCCCACCGTGCTCCTCGTCACCTACTCCTCCGACCACAACCACCCCTCGCCGCCTCCTAGAAACCACCGCAACAGCAGCGGCAATGCTATCATCAGCAACAGCATTGCCGCTTCCAAACCCGACAAGGAATCCGAACCCGAACCCGAGGAGAGGTTTGCGGATCTCGGCGACGGGTCTCTGATCGCCGCCGCGGATGAGTTGGGATGGTTGGGCGAAGTGGAGGCGATGGCGTCGCCGGCGGTTCTAGGAAGCCCGATTTTCTCGGAGCATGAAGCGACGGTGTTGGGGGAAGAGGAGGAGTCGCTTTTCGCGGATCTTGGAGAGTTGCCGGAGTGCTCGGTGGTGTTCCGGCGAGGGGTGCTGNTGGAGAGGGAGGAGGAACAGCGCCGGCGGTTTGCGTGCGGGACCACTGGTTAGTTGAGGCAAACAGCTCCTCCTTGTGACACGTGTCTCCGCAACTGGGAAGTTGGGCTTCCCCTTCCGCACCGCTACAAAATCCAAAAACCTTACCACTACTTTTTTTATTTTTGTTTTTATTTTCTTTGGGCTGAGGTGGGGGTGCAAAATACAAAAAAATACACAAGTGGATTATGTAGTTAGGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03077	24131	25827	-

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003077s00042521.1	PF03106.10	WRKY	34	92	5.20E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.231
SRR1783600	control	21.462
SRR1783602	moderate drought stress	31.788
SRR1811619	moderate drought stress	31.570

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.546
DRR006520	Root Summer glycyrrhizin high producing strain	10.946
DRR006521	Root Winter glycyrrhizin high producing strain	26.501
DRR006522	Root Winter glycyrrhizin high producing strain	26.276
DRR006523	Root Summer glycyrrhizin low producing strain	3.925
DRR006524	Root Summer glycyrrhizin low producing strain	4.024
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.444
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.965

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	100.489
SRR2868004	Drought Stress (root)	148.851
SRR2967015	Control (root)	106.813

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.387
SRR9715740	Leaf	20.728
SRR9715741	Leaf	22.155
SRR9715739	Root	37.468
SRR9715742	Root	19.999
SRR9715743	Root	21.817

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	65.676
SRR8749028	MeJA induced 9h	125.835
SRR8749029	MeJA induced 9h	154.412
SRR8749030	Uninduced	69.815
SRR8749031	Uninduced	110.676
SRR8749032	Uninduced	228.763

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	37.298
SRR8400027	Control - Root	24.971