Gene detail information of Glyur003072s00041245 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G13480.1 | 2.00E-81 | Protein of unknown function (DUF1262) |
| NR | KEH27766.1 | 0 | DUF1262 family protein [Medicago truncatula] |
| trEMBL | tr|A0A072UEA2|A0A072UEA2_MEDTR | 0 | DUF1262 family protein {ECO:0000313|EMBL:KEH27766.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03072 | 12687 | 23937 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003072s00041245.1 | PF06880.6 | DUF1262 | 24 | 105 | 1.80E-28 |
| Glyur003072s00041245.1 | PF06880.6 | DUF1262 | 364 | 473 | 1.60E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.259 |
| SRR1783600 | control | 0.299 |
| SRR1783602 | moderate drought stress | 0.425 |
| SRR1811619 | moderate drought stress | 0.458 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.046 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.046 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 23.349 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 22.500 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.095 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.095 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.062 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.071 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.611 |
| SRR2868004 | Drought Stress (root) | 25.013 |
| SRR2967015 | Control (root) | 11.350 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.516 |
| SRR9715740 | Leaf | 7.348 |
| SRR9715741 | Leaf | 35.379 |
| SRR9715739 | Root | 0.269 |
| SRR9715742 | Root | 0.408 |
| SRR9715743 | Root | 0.231 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.160 |
| SRR8749028 | MeJA induced 9h | 140.480 |
| SRR8749029 | MeJA induced 9h | 72.019 |
| SRR8749030 | Uninduced | 117.966 |
| SRR8749031 | Uninduced | 591.274 |
| SRR8749032 | Uninduced | 190.254 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.337 |
| SRR8400027 | Control - Root | 6.752 |