Gene detail information of Glyur003070s00039567 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G48800.1 | 0 | Phototropic-responsive NPH3 family protein |
| NR | XP_003520918.1 | 0 | PREDICTED: BTB/POZ domain-containing protein At5g48800-like [Glycine max] |
| Swissprot | tr|Q9FKB6|Y5880_ARATH | 0 | BTB/POZ domain-containing protein At5g48800 |
| trEMBL | tr|K7KDE7|K7KDE7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G12660.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03070 | 24977 | 28682 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003070s00039567.1 | PF03000.9 | NPH3 | 196 | 456 | 1.20E-93 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 23.966 |
| SRR1783600 | control | 24.097 |
| SRR1783602 | moderate drought stress | 15.463 |
| SRR1811619 | moderate drought stress | 15.140 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.225 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.136 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.359 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.408 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 20.444 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 20.757 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.491 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.588 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.659 |
| SRR2868004 | Drought Stress (root) | 9.182 |
| SRR2967015 | Control (root) | 9.941 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.208 |
| SRR9715740 | Leaf | 1.404 |
| SRR9715741 | Leaf | 2.628 |
| SRR9715739 | Root | 20.947 |
| SRR9715742 | Root | 19.141 |
| SRR9715743 | Root | 18.923 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.065 |
| SRR8749028 | MeJA induced 9h | 3.371 |
| SRR8749029 | MeJA induced 9h | 3.104 |
| SRR8749030 | Uninduced | 0.483 |
| SRR8749031 | Uninduced | 0.139 |
| SRR8749032 | Uninduced | 0.218 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 18.939 |
| SRR8400027 | Control - Root | 20.060 |