Gene detail information of Glyur003070s00039562 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G60540.2 | 3.00E-17 | Preprotein translocase Sec, Sec61-beta subunit protein |
| NR | XP_004133771.1 | 1.73E-43 | PREDICTED: protein transport protein Sec61 subunit beta-like isoform 1 [Cucumis sativus] |
| Swissprot | tr|P38389|SC61B_ARATH | 4.00E-32 | Protein transport protein Sec61 subunit beta |
| trEMBL | tr|A0A0A0L6Y8|A0A0A0L6Y8_CUCSA | 6.00E-44 | Uncharacterized protein {ECO:0000313|EMBL:KGN56357.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03070 | 4212 | 8629 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003070s00039562.1 | PF03911.11 | Sec61_beta | 124 | 162 | 4.70E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 51.379 |
| SRR1783600 | control | 52.491 |
| SRR1783602 | moderate drought stress | 40.392 |
| SRR1811619 | moderate drought stress | 40.106 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 58.049 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 58.010 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 55.486 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 54.326 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 51.234 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 52.347 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 21.669 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 22.955 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 86.300 |
| SRR2868004 | Drought Stress (root) | 79.419 |
| SRR2967015 | Control (root) | 73.627 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 51.470 |
| SRR9715740 | Leaf | 47.229 |
| SRR9715741 | Leaf | 50.410 |
| SRR9715739 | Root | 58.364 |
| SRR9715742 | Root | 38.852 |
| SRR9715743 | Root | 38.571 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 141.506 |
| SRR8749028 | MeJA induced 9h | 94.686 |
| SRR8749029 | MeJA induced 9h | 204.103 |
| SRR8749030 | Uninduced | 160.971 |
| SRR8749031 | Uninduced | 184.688 |
| SRR8749032 | Uninduced | 253.574 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 65.366 |
| SRR8400027 | Control - Root | 59.009 |