Gene detail

Gene detail information of Glyur003068s00036761

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G15520.1	6.00E-145	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
NR	XP_004514351.1	0	PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic-like isoform X1 [Cicer arietinum]
COG	YP_007093244.1	9.00E-46	cyclophilin type peptidyl-prolyl cis-trans isomerase [Chroococcidiopsis thermalis PCC 7203]
Swissprot	tr\|P82869\|CYP37_ARATH	0	Peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic (Precursor)
trEMBL	tr\|A0A072U108\|A0A072U108_MEDTR	0	Peptidyl-prolyl cis-trans isomerase {ECO:0000313\|EMBL:KEH19455.1}

Sequence

Transcript Sequence

>Glyur003068s00036761.1
CAGAGGATGCGTGTTAGTTGTTCGATTTCCACACACACACACGCACCAACAGCCTTAGCCTTGGCTGCAATGGATTAGGCGCGCGCACAGCACAACGCCACAACACCACGAAACTCCATTTTACCTGCTACAATGGCATTCCCTTTCTCTCCCTCCTTCGACGTTCCCATCACTAGCTGCTTCCCTTCTCCAACTTTCTCTCCCACCCTATCCTTCCTCCCTTTCTCCCATCGCGCCAGGTTATTACAGTCAACAACAATACCAGCGCCTTCTCGAATCTTCTGCTTCTCAAAGAAGCACCACCTCACAAAGGGACTAATGGACCAGCGTGACACGTCATCAGTGGCTATTGGTCAGAGGATAATGAACCAATTCAAGAATGTGATGATTCCCATCATAGTCATAGTGGCGTCCGTTCAGATCACTTTCCTGTTTCCGTTGGTTGATGCGAGGGCAGTTCTGTACTCGCCAGATACGAAGGTTCCTAGAACAGGAGAAGTTGCCCTTAGAAGAGCCATCCCTGCAAANGCTAACATGAAGTCTATTCAGGACTCTCTCGAAGATATTTCGTACCTGTTGAGGATTCCACAGAGGAAACCTTATGGAACAATGGAGGGGAATGTGAAGAAAGTTTTGAAGATAGTGGTAGATGACAAGGATTCTATATTGGCGAGTATACCAGAAGAACGAAAGGAAAAGGGGTTTTTGGTACATGAATCTCTAATAAATGGAAAGGGTGGGTTGCAAGCTCTCCTTCAATCTATAAGGGAACAGGATGCGGATAAAGTATCTGTGAACCTTGCATCTACACTGGATACTGTGGCAGAGCTAGAGTTATTACAGGCACCGGGATTATCCTTTCTGTTGCCGGAGCAATACATGCAATATCCACGGCTTTCAGGTAGAGGAACTGTTGAGTTCGTCATTGAGAAAGGAGATGGTTCAACATTTTCTCCAGTTGGTGGAGAAGAGAGAAAAACTGCCACCATTCAGGTTGTTTTAGATGGGTACTCAGCTCCATTAACTGCAGGGAATTTTGCAAAACTGGTGATGGATGGAGCATATAATGGCGTAAAGCTCAACTGTACCAACCAAGCTATTCTCTCCGGTACTGAACTGGATAAGAACAGTGGTTACAGTGTTCCCTTGGAAATAATGCCCTCTGGACAATTTGAGCCCCTTTATAAAACAACATTAAGTGTGCAGGATGGAGAATTGCCAGTTCTTCCTCTATCTGTTTATGGGGCAGTTGCAATGGCTCATAACGAAGTCTCTGAGGAGTATTCATCACCTTATCAGTTTTTCTTCTATCTCTATGATAAACGAAGTGCTGGATTGGGAGGGATATCATTTGATGAAGGACAATTTTCAGTTTTTGGATACACAACCACAGGGAGAGATATTCTACCTCAGATAAAAACTGGTGATATTATTCGTTCGGCGAAGCTTCTTGAAGGTCAAGACCGGCTTGTATTGCCGAAGGAAAGTTGAGTAGGTCTCTTTGTCGTGTTACCCAAGCAGGAATTACAATCTTTCATTCTTTGTAATATATATGCTGTGTGGATGACATCGGCCTGATTTTCTAGATGCAGGTTGTGTTGTATGTGTTGTAAATTGTAATTATTATTACAATCTTATGATCCACGGTTCAAATCACATGGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03068	22850	29262	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0000413 protein peptidyl-prolyl isomerization

GO:0006457 protein folding

molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003068s00036761.1	PF00160.16	Pro_isomerase	285	431	4.50E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.223
SRR1783600	control	1.191
SRR1783602	moderate drought stress	0.732
SRR1811619	moderate drought stress	0.731

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.130
DRR006520	Root Summer glycyrrhizin high producing strain	0.128
DRR006521	Root Winter glycyrrhizin high producing strain	0.346
DRR006522	Root Winter glycyrrhizin high producing strain	0.379
DRR006523	Root Summer glycyrrhizin low producing strain	2.594
DRR006524	Root Summer glycyrrhizin low producing strain	2.656
DRR006525	Leaf Summer glycyrrhizin high producing strain	39.262
DRR006526	Leaf Summer glycyrrhizin high producing strain	39.288

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.814
SRR2868004	Drought Stress (root)	0.955
SRR2967015	Control (root)	0.611

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.473
SRR9715740	Leaf	18.435
SRR9715741	Leaf	8.352
SRR9715739	Root	0.507
SRR9715742	Root	0.389
SRR9715743	Root	0.844

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.925
SRR8749028	MeJA induced 9h	3.646
SRR8749029	MeJA induced 9h	1.810
SRR8749030	Uninduced	0.637
SRR8749031	Uninduced	0.219
SRR8749032	Uninduced	0.296

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.086
SRR8400027	Control - Root	1.670