Gene detail

Gene detail information of Glyur003065s00036135

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G30380.2	1.00E-146	alpha/beta-Hydrolases superfamily protein
NR	XP_003552623.1	0	PREDICTED: alpha/beta hydrolase domain-containing protein 17C-like [Glycine max]
COG	YP_724418.1	2.00E-47	hypothetical protein Tery_5033 [Trichodesmium erythraeum IMS101]
trEMBL	tr\|I1N4S9\|I1N4S9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G51140.1}

Sequence

Transcript Sequence

>Glyur003065s00036135.1
ATGGGGGCAGTGACGTCGTCGATGGCGGCGAAGTTCGCGTTCTTCCCACCGAATCCGGCGTCGTATGGGGTAGGGGTGGACGAGGTGACGGGGAAGCCGAGGATGACGGGGGTGGCGACCAGGGAAAACGTCGACGTATTGAAGCTGTTCACCAAGAGAGGAAACAGCATCGTCGCCCTCTACGTAAGGAACCCTTCCGCCTCCCTCACTCTCCTCTACTCCCACGGTAACGCCGCCGATCTGGGTCAGATGTACGAGTTGTTCACTGAACTCAGTCTCCACCTCCGAGTCAACCTCCTCTGCTATGACTATTCTGGGTATGGCCAGTCCTCTGGGAAGCCTAGTGAGCAGAACACTTACGCAGACATAGAAGCTGCTTATAAATGTTTGGTAGAGATGTATGGGGCGAAAGAGGAGGATATTATTCTCTATGGACAATCTGTTGGCAGTGGACCTACCACAGATTTAGCCACTCGTTTACCCAACCTCAGGGCTGTAGTTCTCCACAGTCCCATCTTATCTGGCCTTCGGGTCATGTATCCCGTGAAGCGGACTTATTGGTTTGACATTTATAAGAACATTGATAAAATTCCCTTGGTCAATTGTCCAGTTCTGGTAATTCATGGAACGGCTGATGATGTAGTAGATTGCTCCCATGGGAAGCAACTTTGGGAACATTGTAAACAGAAATATGAACCTTTATGGGTTAAAGGAGGAAATCATTGTGACCTAGAGCTTTTCCCTCAGTATATAAAGCACCTTAAGAAATTTATTGTGGCTATTGAGAAGTCATCGCATCAAAGAACTGGATCTGGACCTGTTCCTGATCAACTGGACAAACCTCGGAACAGCTCAGACTTTAGAGAGAAACCTAGACCCAGCATGGATCTAAGGGATAATTCTAGACNGAGTATTGATTTCAAAGAAAAGCCTAGGACAAGCACAGACCATAAAGAAAAGTCAAGAGCTGGCATGGATAAGAAAGATAAATCAAGAAAGAGTATAGATCGCACTGAGAAAGCAAATAATGGTGCAGACATTCCTGAGAAGGCTAGAAATAGCATTGACCGTTTTGGGGAGATGGTGAGATCAGTTGGATTATGCAATATTGATTGTTTCAGACCNACGGCAACTCATTCATGAAGATGACACGGCTTACACGTTGAGATTGTGTTCTTCTCATTAATTATTTGATTGATTTATGGAATGTATGGGTGATAGGAAAATGTTACATTGTGTCATGTGTGCAACTTATTTTCTAAAGAAATAGATGAAAAAGTAATTTAACCAGGTAGAGATCATGTCATGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03065	5250	8397	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003065s00036135.1	PF12695.2	Abhydrolase_5	70	242	7.90E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.451
SRR1783600	control	1.482
SRR1783602	moderate drought stress	1.390
SRR1811619	moderate drought stress	1.316

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.461
DRR006520	Root Summer glycyrrhizin high producing strain	3.428
DRR006521	Root Winter glycyrrhizin high producing strain	1.422
DRR006522	Root Winter glycyrrhizin high producing strain	1.494
DRR006523	Root Summer glycyrrhizin low producing strain	10.990
DRR006524	Root Summer glycyrrhizin low producing strain	10.834
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.253
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.269

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.215
SRR2868004	Drought Stress (root)	11.729
SRR2967015	Control (root)	16.046

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.863
SRR9715740	Leaf	2.742
SRR9715741	Leaf	2.184
SRR9715739	Root	1.062
SRR9715742	Root	3.013
SRR9715743	Root	1.826

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.731
SRR8749028	MeJA induced 9h	15.381
SRR8749029	MeJA induced 9h	18.752
SRR8749030	Uninduced	5.965
SRR8749031	Uninduced	2.689
SRR8749032	Uninduced	4.750

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.973
SRR8400027	Control - Root	9.660