Gene detail

Gene detail information of Glyur003060s00043860.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G80560.1	1.00E-17	isopropylmalate dehydrogenase 2
NR	ACJ84279.1	1.02E-19	unknown [Medicago truncatula]
COG	YP_007216368.1	6.00E-20	3-isopropylmalate dehydrogenase [Thioalkalivibrio nitratireducens DSM 14787]
Swissprot	tr\|P93832\|LEU32_ARATH	5.00E-20	3-isopropylmalate dehydrogenase 2, chloroplastic (Precursor)
trEMBL	tr\|B7FHQ0\|B7FHQ0_MEDTR	4.00E-20	3-isopropylmalate dehydrogenase {ECO:0000256\|RuleBase:RU004445}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03060	9109	12760	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00052	leuB	EC:1.1.1.85	2-Oxocarboxylic acid metabolism	map01210
			Biosynthesis of amino acids	map01230
			C5-Branched dibasic acid metabolism	map00660
			Valine, leucine and isoleucine biosynthesis	map00290

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0000287 magnesium ion binding

GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO:0051287 NAD binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003060s00043860.1	PF00180.15	Iso_dh	25	55	1.80E-05
Glyur003060s00043860.1	PF00180.15	Iso_dh	83	126	7.10E-17

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	3.086
SRR1783600	control	3.448
SRR1783602	moderate drought stress	9.508
SRR1811619	moderate drought stress	9.093

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.152
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.319

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.000
SRR2868004	Drought Stress (root)	0.415
SRR2967015	Control (root)	0.648

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.070
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.145
SRR8749028	MeJA induced 9h	0.122
SRR8749029	MeJA induced 9h	0.125
SRR8749030	Uninduced	0.548
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.071

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.865
SRR8400027	Control - Root	17.422