Gene detail

Gene detail information of Glyur003057s00039115

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G02710.2	1.00E-105	PAS/LOV protein B
NR	XP_004489990.1	0	PREDICTED: protein TWIN LOV 1-like isoform X1 [Cicer arietinum]
COG	NP_419104.2	2.00E-30	sensory box histidine kinase [Caulobacter crescentus CB15]
Swissprot	tr\|O64511\|TLOV1_ARATH	9.00E-144	Protein TWIN LOV 1
trEMBL	tr\|T2DMI1\|T2DMI1_PHAVU	0	Twin lov 1 protein {ECO:0000313\|EMBL:AGV54646.1}

Sequence

Transcript Sequence

>Glyur003057s00039115.1
ATTTGTGTGACTCCGGTTTGTTGCTGTAGTTAGGAAATCGCTTCCTCCNTCAGCTTTCTCCATTTTGGTAGNGACAGTGTGCGTTTGTTGTCTTCCTTCCTCCACCTCCATCCATCGTGTTCCTAACTCATAACAATTTCCCCTATCATTTNNCCCCTTTCTCCCTGGTCCNTCTTCAAAGTACACACACACACATTCACCCTCATCACAAAACAACAAAGCGTGAGAGGTTAATGAGTAGTATTATTCATCCACCCATCGCCACCACCACAACTTTCCCCAGATATTATTATTCCCCAAAATTTCCTTCATCATCATCACCAACCTCACACACTCAACACCTTCCCCTCACGATGCCAACTTAACACCCTGTTAGTTTTAAGTAGTAACTATTTTATTTTGGGAAGTAGCAGCATAACACAGCATAGCACAAAGCAGCATCGAGAGCCCAAGGAGGAGTTGTTCACATGGGATTATTGGGAACAACTCCAAGAAGAAGGAGAAAGATCCAAGGTTGTGGTTGTTTTTGTTGTTGCTACTGCTGCGAAGAGCGAGTAGTAGTAATAGTAGTAGAGGATGTCGACAACAACGGAACCCAGCAACGAAGTGCGTGGTGTGATAGAGCGATCCTTCGACGACCGTTACTCACGCCACGCGCGCGAGTCGCTCGACGAATTGCCTGAGAATTTCACCATCACCGACCCTTCCGTTTCNGGACACCCAATCGTTTTCGCCAGCCTCGGGTTCCTCAAGATGACGGGCTTCGAGCGCCACGAGGTTGTCGGGAAGGGAGGGGGCATGTTTCAGGGACCTGGGACTTGTCGGAGGTCGGTGATGGAGATTCGTGAGGCCGTTAGGGAGGAGAGAGAGGCTCAGGTCGTTTTGCTTAATTACCGCAAGGACGGCACGCCGTTTTGGATGTTGCTCCGTGTTTGCCCTGTTTTCAGTGCACACGGTGGTTCTGTCGTTCACTTTGTTGCCGTTCAGGTTCCACTTCANCGGAAACCCAGGGCTTGTTCTCCCGGTGGTGGGGGGTTTTCCCAGGTGCACGACTTCGTGTTCCGGTGTTGTCGGAAGGAAGTGTGCTCTGATTCTTTGGCTGAACTCGGTNGTGCTTCTTCCATGAATCAAGTGTTGGAACGTGATGTCACAGAATTGGAGAGTGAAGAGCCGTGTGAGGCAAGTGATGTTGAGAAGAGAAGCGCTGTGACTGCCATGGACAACATCTTTTCTGTGCTNACCCACTATAGCGAGTTGACAGGCAGATTGGTGTGTAGAAAGAGATGCAGCAATCCTGACGTGGGTCTTCTTAGCTCATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCACATTTGCCGGACATGCCTATTGTTTATGCCAGTGATGCCTTCTTGAAATTGACAGGTTATGCGAGAGATGAAGTATTGGGCCACAACTGTAGATTTTTAGGTGGAGGAAATACTGATACCTCAGCTTTACATCTGATAAGGGAAAGCATTAAAACGGAACAACCATGCACAGTACGTATTTTGAATTACAGGAAGGATAAAAGCTCATTTTGGAATCTTCTTCACATCTCACCTCTTCGTAATGCTTCTGGAAAGGTAGCATACTTTGTGGGNGTTCAAATAGAAGACGACTATAAAAACGAGGACAGACAGTGTTGGAGACCTGACATGAGNCACCTTAGCGTGGTTGGCGTAGTCAAGGTTGCTGTGAGGAGTTTATCAATGTCTGCCGGGTCGTCCAAGTCATAGAGTCATATAGGATATATATATANAACTCGTGGGGGATTCTTTGCCTTTGATATATATGGTTTTCCAAATATTATAATGTGCCTACTTCCCAAAAGAAAAAGAAAAATGCTAATCCATTCGGAAAAATTATCAATCTCAACTGGTGATCGTTGAGATGATAGAAAAGTGGAAGATTGATTTCTGAAAAAAAAATTGAAAAATCCATATTGTCAATTGCAAGAATACATTCTGCGTTGGAAGTCTATAAAATGTGTTCTATTTCTACATAGTACATACTGCGTTGAAAGGTCGAACTTCATTTTTCCTTGATGTAGCAATAAATAAGACTTGTGCTAACTTTCCCCTCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03057	19707	24597	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007165 signal transduction

molecular_function
GO:0004871 signal transducer activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003057s00039115.1	PF13426.1	PAS_9	38	136	2.50E-16
Glyur003057s00039115.1	PF13426.1	PAS_9	260	357	2.00E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.826
SRR1783600	control	7.930
SRR1783602	moderate drought stress	11.644
SRR1811619	moderate drought stress	11.664

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.777
DRR006520	Root Summer glycyrrhizin high producing strain	12.096
DRR006521	Root Winter glycyrrhizin high producing strain	63.621
DRR006522	Root Winter glycyrrhizin high producing strain	62.237
DRR006523	Root Summer glycyrrhizin low producing strain	15.171
DRR006524	Root Summer glycyrrhizin low producing strain	14.871
DRR006525	Leaf Summer glycyrrhizin high producing strain	32.163
DRR006526	Leaf Summer glycyrrhizin high producing strain	32.180

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.592
SRR2868004	Drought Stress (root)	16.795
SRR2967015	Control (root)	18.575

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	54.213
SRR9715740	Leaf	82.449
SRR9715741	Leaf	71.761
SRR9715739	Root	3.093
SRR9715742	Root	7.850
SRR9715743	Root	5.620

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.228
SRR8749028	MeJA induced 9h	6.878
SRR8749029	MeJA induced 9h	6.206
SRR8749030	Uninduced	4.496
SRR8749031	Uninduced	2.224
SRR8749032	Uninduced	1.558

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.527
SRR8400027	Control - Root	13.795