Gene detail

Gene detail information of Glyur003057s00039111

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G69850.1	2.00E-165	nitrate transporter 1:2
NR	XP_006573086.1	0	PREDICTED: nitrate transporter 1.2-like [Glycine max]
COG	YP_001878199.1	4.00E-11	amino acid/peptide transporter [Akkermansia muciniphila ATCC BAA-835]
Swissprot	tr\|Q8H157\|PTR19_ARATH	0	Protein NRT1/ PTR FAMILY 4.6
trEMBL	tr\|I1J5K4\|I1J5K4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G04900.1}

Sequence

Transcript Sequence

>Glyur003057s00039111.1
GAAAGATGAAAGTCAATTTCNTTGTTTAAATGGTGTTAGTGTGATGACCATTCTGCCCAAACTTGAAGCCTCTCCTCCCCTCTTTAAATCTCTCACCAGTTCAGTTCCCCCTTTACCATCGAAATTAAACCCTTCTCAGAATCCAAAGCAAACAACCATGGCTGTGTTTGTGAGTGTAGTGGTGGAGATATTGGAGAATCTGGCGTATTTGGCGAATGCGAGCAACTTGGTGTTGTACCTGAAGCAGTATATGCACATGTCGCCTTCGAAATCTGCCAACAGTGTAACCAATTTCATGGGAACGGCTTTCCTCCTCGCCCTCCTCGTTATTGAGCTCCTGGGTCTGATTGTACTCACCATACAAGCTCGTGTGTCTTCACTGAAGCCATCAAAATGTGAGGGAGGCACCCCATGTGAGGAAGTAAACAGTGGAAAGGCAGCAATGCTATTTGCTGGACTCTATCTTGTGGCTCTAGGAGTTGGAGGAATCAAAGGGTCACTTCCAGTACATGGTGGTGAGCAATTTGATGAAACTACCCCATCTGGAAGGAAGCAGAGATCAACCTTCTTCAACTACTTTGTCTTCTGCCTATCATGTGGTGCCCTTATTGCAGTTACTTTTGTTGTATGGGTTGAAGACAACAAAGGGTGGGAGTGGGGTTTTGCAATATCTACTATTAGCATATTTGTGTCCATCCCAGTGTTCTTGGCGGGCTCCAATACTTACAGGAATAAGATCCCTTCAGGAAGTCCACTTACAACCATTTTAAAGGTTTTTATTGCTGCTTCACATAATAGCTGCACCTACAGAAACTCTAGCTGTGTTGTTGTGAATATGGCTTCAAGCCCTTCTTATCCACACTCAGATAGAAAAGAATCAGAGGAAGAAACTGCAAAAACAAGCACAACAACTGAAACCCCAACAGAGTCCCTCAAATTTCTCAACAGATCTGTTGCAAACAAGCCAATCTATTCAACACTAGAGTGCACTGTACAGCAAGTAGAAGACGTCAAGGTAGTATTGAAAGTACTACCCATATTTGCTTGTACCATCATGCTTAACTGTTGCTTGGCTCAGCTATCCACATTCTCTGTTGAACAAGCTGCTACTATGGACACCAAACTTGGTTCCCTCAAGGTTCCACCAGCTTCTTTACCAGTTTTCCCAAGAATTGGAGTTGGATTAGTACTCTCTATAGTTGCAATGGCTGTGGCTGCTCTTGTTGAGATAAAAAGGAAAAGGGTAGCCACTCACTCAGGCCTACTTGATGATCCAACAAAACCACTACCCATCACATTCCTTTGGATAGCTTTTCAGTACTTGTTTCTTGGTTCAGCTGATCTTTTCACCTTGGCAGGGTTGTTGGAGTTTTTCTTCTCAGAAGCACCAATAAGGATGAGATCCTTGGCCACATCACTATCTTGGGCCTCTTTGGCAATGGGGTACTACCTAAGTTCAGTGATTGTGTCTATAGTGAACAGTGTCACTGGTAACACAACACACAAACCATGGCTATCTGGTCATAACCTTAACAACTATCACCTTGAGAGGTTCTACTGGCTCATGTGTGTGCTAAGTGGGTTGAACTTCCTACATTACATGTATTGGGCTGTTAGGTACAAATATAGAGGGAGAGGGACTACTAATTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03057	7360	14086	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003057s00039111.1	PF00854.16	PTR2	92	380	3.10E-58

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.853
SRR1783600	control	5.944
SRR1783602	moderate drought stress	7.238
SRR1811619	moderate drought stress	7.055

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.450
DRR006520	Root Summer glycyrrhizin high producing strain	11.074
DRR006521	Root Winter glycyrrhizin high producing strain	4.787
DRR006522	Root Winter glycyrrhizin high producing strain	4.870
DRR006523	Root Summer glycyrrhizin low producing strain	5.621
DRR006524	Root Summer glycyrrhizin low producing strain	5.537
DRR006525	Leaf Summer glycyrrhizin high producing strain	30.770
DRR006526	Leaf Summer glycyrrhizin high producing strain	30.613

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	36.819
SRR2868004	Drought Stress (root)	33.222
SRR2967015	Control (root)	32.933

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	32.717
SRR9715740	Leaf	132.109
SRR9715741	Leaf	49.047
SRR9715739	Root	4.416
SRR9715742	Root	18.502
SRR9715743	Root	18.065

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.027
SRR8749028	MeJA induced 9h	22.962
SRR8749029	MeJA induced 9h	7.105
SRR8749030	Uninduced	11.457
SRR8749031	Uninduced	3.342
SRR8749032	Uninduced	2.270

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.498
SRR8400027	Control - Root	19.811