Gene detail information of Glyur003049s00040646.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G00180.1 | 7.00E-52 | Plant-specific transcription factor YABBY family protein |
| NR | XP_003517025.1 | 4.33E-116 | PREDICTED: axial regulator YABBY 1-like [Glycine max] |
| Swissprot | tr|O22152|YAB1_ARATH | 8.00E-76 | Axial regulator YABBY 1 |
| trEMBL | tr|I1J7S5|I1J7S5_SOYBN | 2.00E-116 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G33370.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03049 | 3280 | 6760 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-YABBY |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003049s00040646.1 | PF04690.8 | YABBY | 70 | 153 | 7.50E-41 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.106 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.926 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.000 |
| SRR2868004 | Drought Stress (root) | 0.026 |
| SRR2967015 | Control (root) | 0.070 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.841 |
| SRR9715740 | Leaf | 1.726 |
| SRR9715741 | Leaf | 3.640 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 1.207 |
| SRR9715743 | Root | 1.617 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.076 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.013 |
| SRR8400027 | Control - Root | 0.851 |