Gene detail information of Glyur003042s00040663 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G10360.2 | 2.00E-16 | Ribosomal protein S6e |
| NR | KHN22176.1 | 1.37E-39 | 40S ribosomal protein S6-2 [Glycine soja] |
| Swissprot | tr|P29345|RS6_TOBAC | 5.00E-35 | 40S ribosomal protein S6 (Fragment) |
| trEMBL | tr|V7B584|V7B584_PHAVU | 2.00E-38 | Uncharacterized protein {ECO:0000313|EMBL:ESW12710.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03042 | 20367 | 22679 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 76.208 |
| SRR1783600 | control | 73.039 |
| SRR1783602 | moderate drought stress | 50.296 |
| SRR1811619 | moderate drought stress | 59.032 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 59.807 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 58.997 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 27.193 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 28.813 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 87.461 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 91.253 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.562 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.349 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 220.076 |
| SRR2868004 | Drought Stress (root) | 162.482 |
| SRR2967015 | Control (root) | 152.431 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 70.565 |
| SRR9715740 | Leaf | 67.377 |
| SRR9715741 | Leaf | 62.739 |
| SRR9715739 | Root | 228.011 |
| SRR9715742 | Root | 139.334 |
| SRR9715743 | Root | 152.930 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 186.232 |
| SRR8749028 | MeJA induced 9h | 70.746 |
| SRR8749029 | MeJA induced 9h | 140.150 |
| SRR8749030 | Uninduced | 30.757 |
| SRR8749031 | Uninduced | 14.524 |
| SRR8749032 | Uninduced | 40.969 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 148.220 |
| SRR8400027 | Control - Root | 148.568 |