Gene detail information of Glyur003042s00040662 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G27110.2 | 2.00E-07 | FAR1-related sequence 3 |
| NR | XP_004492256.1 | 6.28E-21 | PREDICTED: 40S ribosomal protein S6-like [Cicer arietinum] |
| Swissprot | tr|P29345|RS6_TOBAC | 1.00E-19 | 40S ribosomal protein S6 (Fragment) |
| trEMBL | tr|I1MM57|I1MM57_SOYBN | 6.00E-21 | 40S ribosomal protein S6 {ECO:0000256|PIRNR:PIRNR002129} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03042 | 11617 | 16436 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003042s00040662.1 | PF10551.4 | MULE | 110 | 146 | 4.10E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.031 |
| SRR1783600 | control | 0.889 |
| SRR1783602 | moderate drought stress | 1.846 |
| SRR1811619 | moderate drought stress | 1.611 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.721 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.162 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.979 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.247 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.440 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.708 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.559 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.485 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.232 |
| SRR2868004 | Drought Stress (root) | 9.754 |
| SRR2967015 | Control (root) | 9.182 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.517 |
| SRR9715740 | Leaf | 5.020 |
| SRR9715741 | Leaf | 3.842 |
| SRR9715739 | Root | 15.442 |
| SRR9715742 | Root | 7.722 |
| SRR9715743 | Root | 8.441 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.387 |
| SRR8749028 | MeJA induced 9h | 1.512 |
| SRR8749029 | MeJA induced 9h | 3.556 |
| SRR8749030 | Uninduced | 0.765 |
| SRR8749031 | Uninduced | 1.179 |
| SRR8749032 | Uninduced | 2.750 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.226 |
| SRR8400027 | Control - Root | 11.793 |