Gene detail

Gene detail information of Glyur003032s00041044

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G18130.1	0	phytochrome E
NR	XP_007138490.1	0	hypothetical protein PHAVU_009G213400g [Phaseolus vulgaris]
COG	YP_007123595.1	2.00E-83	bacteriophytochrome (light-regulated signal transduction histidine kinase) [Microcoleus sp. PCC 7113]
Swissprot	tr\|P55004\|PHYE_IPONI	0	Phytochrome E
trEMBL	tr\|V7AY23\|V7AY23_PHAVU	0	Phytochrome {ECO:0000256\|PIRNR:PIRNR000084}

Sequence

Transcript Sequence

>Glyur003032s00041044.1
GATTGTGATATGGCAACAACTCATTGTCGGTTTGTCAGAAAAAGCACAGAAGAGCAGTGCTGCACCTTGAATAAAAGTTCTCTTCCTTCTCAACCACAAGACGAAACCGAAAAGCTAAAATAAAAACTAGCATGGCAAAAACAAGTACCAGGCATAGGCATGTGTGTGAATTGTGATACATGATGGAGAGAGAGCATAAACAGAAACAAAAATTGCTGAAAGGATTTTAAGCATGACATTGCCCACACCCTTCAAAACATGACAAAGACGTGTGTGTAGTGTTCAACCCCATGATAGAGAAGAGAAGAGAAAGAGGAATCAAATAATAGCTTTTTGATTTTTTGCAGCGTTTGGAAATGAGCTTTGGAGGAATAAGAGGGAAATTGAAGAAAGACTCAAGCTTGACGGCATCAGTTGAAAGCAAAATGAACAACAACACCAACAACAAGGCACTTGCTCAGTACGGTGCAGATGCTGAGATTCTTGCTGAGTTTGAGCAATCTGGTGTCTCTGGCAAATCATTTGACTACTCAAAGACGGTTCTTGATCCTCCCAGGTTAGTGTCTGAGGAGAAAATGACTTCTTACTTGTCCAAAATCCAAAGGGGTGGCCTTATCCAACCCTTTGGTTGTGTGGTAGTAATTGAAGAACCCACTTTTAGGATCATTGGGTACAGTGAGAATTGCTTTCAATTGTTGGGTTTGAAGAGGGAAATTGAGGACTCAAAAAAGCAGTTTTTGGGTCTAATTGGGGTTAATGTCACAACACTGTTCACTCCCCCTTCTGGAGCTTCCCTTGCAAAAGCTGTGGCTTCCAGGGAGGTCTCTCTTTTGAACCCCATTTGGGTCTATGCAAGGAATACCCAGAAGCCATTTTATGCCATACTTCACAGGATTGATGTTGGGGTTGTGATTGATTTGGAGCCTGCAAGGTCCAGTGACCCTGCATTGTCACTTGCTGGGACAGTTCAGTCACAGAAGCTGGCTGTTAGAGCAATCTCAAGGCTTCAATCTCTCCCTGGGGAAGACATTGGTCTCTTGTGCGACACAGTCATCGAGGAGGTGCAGAAGCTTACTGGGTATGACAGGGTCATGGTTTATAAGTTTCATGAGGATGGTCATGGTGAGGTAGTGTCTGAGATTAGGAGGTCAGATTTGGAACCTTACTTGGGTTTGCATTACCCTGCCACTGATATCCCTCAAGCTGCTCGGTTCTTGTTCAAGCAAAACCGGGTCAGGATGATTGGCAATTGCCACGCAAAGCCGGTTAGGGTCATTCAGAGTGAAGAATTAAGGCAACCTCTTTGCTTGGTGAACTCAACCCTTAGGTCACCACATGACTGTCACGCGCAGTACATGGCTAACATGGGCTCAATTGCCTCTCTGGTGATGGCAGTTGTAGTCAATGGAAATGATGCAACAACATGGCTTTGGGGTTTGCTAGTTTGTCACCATACTTCACCGCGCTATGTGCCTTTCCCGGTTCGGTATGCTTGTGAGTTCCTAATGCAGGCTTTTGGACTGCAGCTTTATATGGAGATTCAACTGGCCTCACAGATGGCAGAGAAGAGGATTCTCAAGACACAAACCTTGCTGTGTGACATGCTCCTGCGNGATGCGCCGTTAGGCATTGTGACTCAATCCCCAAGCATCATGGATCTTGTGAAGTGTGATGGGGCTGCCTTGTATTATGATGGGAAATGTTGGTTGTTAGGCACAACCCCAACCGAGTCACAGGTGAAAGACATTGCGGAATGGCTACTGAGCAACCATGGGGACTCAACGGGTTTGACCACAGATAGTTTGGCTGATGCTGGTTATCCAGGAGCTGCTTTGTTGGGGGATGCAGTTTGTGGCATGGCCACAGCAAGAATCAGTTCAAGGCATTTCTTGTTCTGGTTCAGGTCTCACACTGCTAAGGAAGTGAGGTGGGGAGGAGCCAAGCACCATCCAGAGGATAAAGATGATGGAGGAAAAATGAACCCAAGGTCATCATTCAAGGCTTTTCTTGAAGTAGTCAAAAGCAAAAGTTTGCCTTGGGAAGTGTCAGAAATCAATGCTATTCACTCATTACAACTAATCATGAGAGATTCATTCCAAGACATGGAGAACATGGGTCCGAAGACGCTGAGTTCTATAAAGAAAAATGACACTGCGATGGGAGGGACGGATGAACTCCGTTCAGTAGCACTTGAAATGGTGAGATTAATTGAGACAGCAACAGTCCCAATTTTTGGGGTTGATTCAGATGGCTTAATCAATGGATGGAATGTGAAAATTGCTGAATTGACAGGCCTACTGGCCAGTGAAGCTATGGGAAAATCCTTAGCAAATGAAGTAGTACATGCGGACTCACNTGAAACTCTTACAAATATTATAAGAAGAGCCTTGCAAGGTCAAGAGGACAAAAATGTTGAGTTGAAAATAAAGCACTTTGGGCTTCATCAAGAAAAGGTTGTATATCTCATGGCCAGTGCCTGCACAAGTAGGGACTACACAAATGCTATTGTTGGGGTATGCTTTGTAGGTCAAGACATTACACACGAGAAAGCGGTTCTAGATAAATTCATCAAGTTGGAAGGTGATTACAAAGCTATTATACAGAGCCTAAATCCACTGATTCCACCCATATTTGCTTCTGATGAGAATGCCTGCTGCTCTGAATGGAATGCAGCCATGGAAAGGCTAACCGGATGGAAAAGAGATGAAATCCTAGGAAAAATGCTTCCCGGCGAAATCTTTGGAAGTCTTTGTCGATTGAAATGTCAAGATACCCTGACTAATTTTATGATTTTGCTGTATCGTGGAATAAGTGGTCAAGATTCTGAGAAGTTACCATTTGGATTTTTTGATAAAGATGGAGAATTTATAGAGGCTTATATAACAGCAAACAAGAGGGTAGATGCGGGTGGGAATATAATTGGCTGCTTCTGCTTCTTGCAGATTGTATCGCTGGATTTGAATCAGCCCTCTCAAGGACACAGGTCTAAAGGCAGAGAAAGGACTTCGGAATCTAAGGAGTTAGCTTATGTACTACAAGAGATGAAGAATCCTTTAAATGGAATCCGATTCACTCACAAACTTCTGGAAAATACAGATGTAACAGAAAACCAGAAACAGTTTCTTGACACTAGTGACGCATGTGAAAGACAGATCATGGCAATTATTGAGGATACAGATTTAGGAAGTATCAATGAAGGCAGCACTTGGAAGCTAAACATGGAAGAGTTTCTTCTGGGAAATATTTTAGATGCCATTGTGAGTCAAGTCATGATGTTGGTAAGAGGAAAAAACTTACAGCTGTTTCATGAAATTCCTGACGAAATCAAAACGCTTTCCCTTTACGGGGATCAAATTAGGCTTCAGGTGGTCTTGTCCGATGTTTTGCTCAATGTAGTCAACCATACAGCATCTCCAAATGGCTGGGTAGAAATCAAGATTTCGCCTGGTTTAAAAGTAATACAGGATGGCAATGAGTTTATCCATCTAAAGTTTAGAATGACCCATTCTGGTCAAGGTCTTTCTTCTGCTGTTCTTCATGATATGTTTGAAGGAGGGAATCAATGGACTACACAGGAAGGTCTAGGGCTATATATGTCCAGGAAAATCCTGAGTAGGATGAATGGTCATGTCCACTATGTAAGAGAACAAAATAAGTGCTATTTCCTCATTGATCTTGAACTAAGAACAAGAAAAGAAAAGGCAAAGGAATTTGCAAGCAGAGACAAGAATGTTAACTTAGCTTTCTTCTCTAGATGCTCTTTCAAGTAGAAGTCTGGGATCTAGCTTTGAGGCCCGACTGATATGGTAAGTGCTTATTTCAACATTGGAATAAATATATCATATATTAAAGGAAATTTATTTGTGACTGTTCAGGCAGATTTTTACTCAATATATGTGCTTATATACTGCAGTTTGAAAATGCTACAGTAATATGTACAATAGAAGTATAGAACTGGAAAGGAGTTATGAATATTGTATCCCCTTTCCCCAATAACCAGCATGGCTAATGATTGTTTGTAATATATATTCAATTAATTCATGTCTGAATAAGA

Protein Sequence

>Glyur003032s00041044.1
MSFGGIRGKLKKDSSLTASVESKMNNNTNNKALAQYGADAEILAEFEQSGVSGKSFDYSKTVLDPPRLVSEEKMTSYLSKIQRGGLIQPFGCVVVIEEPTFRIIGYSENCFQLLGLKREIEDSKKQFLGLIGVNVTTLFTPPSGASLAKAVASREVSLLNPIWVYARNTQKPFYAILHRIDVGVVIDLEPARSSDPALSLAGTVQSQKLAVRAISRLQSLPGEDIGLLCDTVIEEVQKLTGYDRVMVYKFHEDGHGEVVSEIRRSDLEPYLGLHYPATDIPQAARFLFKQNRVRMIGNCHAKPVRVIQSEELRQPLCLVNSTLRSPHDCHAQYMANMGSIASLVMAVVVNGNDATTWLWGLLVCHHTSPRYVPFPVRYACEFLMQAFGLQLYMEIQLASQMAEKRILKTQTLLCDMLLRDAPLGIVTQSPSIMDLVKCDGAALYYDGKCWLLGTTPTESQVKDIAEWLLSNHGDSTGLTTDSLADAGYPGAALLGDAVCGMATARISSRHFLFWFRSHTAKEVRWGGAKHHPEDKDDGGKMNPRSSFKAFLEVVKSKSLPWEVSEINAIHSLQLIMRDSFQDMENMGPKTLSSIKKNDTAMGGTDELRSVALEMVRLIETATVPIFGVDSDGLINGWNVKIAELTGLLASEAMGKSLANEVVHADSXETLTNIIRRALQGQEDKNVELKIKHFGLHQEKVVYLMASACTSRDYTNAIVGVCFVGQDITHEKAVLDKFIKLEGDYKAIIQSLNPLIPPIFASDENACCSEWNAAMERLTGWKRDEILGKMLPGEIFGSLCRLKCQDTLTNFMILLYRGISGQDSEKLPFGFFDKDGEFIEAYITANKRVDAGGNIIGCFCFLQIVSLDLNQPSQGHRSKGRERTSESKELAYVLQEMKNPLNGIRFTHKLLENTDVTENQKQFLDTSDACERQIMAIIEDTDLGSINEGSTWKLNMEEFLLGNILDAIVSQVMMLVRGKNLQLFHEIPDEIKTLSLYGDQIRLQVVLSDVLLNVVNHTASPNGWVEIKISPGLKVIQDGNEFIHLKFRMTHSGQGLSSAVLHDMFEGGNQWTTQEGLGLYMSRKILSRMNGHVHYVREQNKCYFLIDLELRTRKEKAKEFASRDKNVNLAFFSRCSFK

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03032	7442	13436	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006355 regulation of transcription, DNA-templated

GO:0007165 signal transduction

GO:0009584 detection of visible light

GO:0009585 red, far-red light phototransduction

GO:0017006 protein-tetrapyrrole linkage

GO:0018298 protein-chromophore linkage

cellular_component
GO:0016020 membrane

molecular_function

GO:0000155 phosphorelay sensor kinase activity

GO:0004871 signal transducer activity

GO:0005515 protein binding

GO:0009881 photoreceptor activity

GO:0042803 protein homodimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003032s00041044.1	PF08446.6	PAS_2	77	191	5.80E-39
Glyur003032s00041044.1	PF01590.21	GAF	227	395	1.20E-37
Glyur003032s00041044.1	PF00360.15	PHY	406	584	3.10E-71
Glyur003032s00041044.1	PF00989.19	PAS	613	727	1.30E-21
Glyur003032s00041044.1	PF00989.19	PAS	743	862	3.60E-22
Glyur003032s00041044.1	PF00512.20	HisKA	886	948	1.80E-09
Glyur003032s00041044.1	PF02518.21	HATPase_c	997	1103	4.80E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.080
SRR1783600	control	0.081
SRR1783602	moderate drought stress	0.043
SRR1811619	moderate drought stress	0.055

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.241
DRR006520	Root Summer glycyrrhizin high producing strain	0.212
DRR006521	Root Winter glycyrrhizin high producing strain	1.090
DRR006522	Root Winter glycyrrhizin high producing strain	1.071
DRR006523	Root Summer glycyrrhizin low producing strain	0.054
DRR006524	Root Summer glycyrrhizin low producing strain	0.054
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.162
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.186

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.613
SRR2868004	Drought Stress (root)	0.645
SRR2967015	Control (root)	0.537

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.313
SRR9715740	Leaf	4.741
SRR9715741	Leaf	2.917
SRR9715739	Root	0.000
SRR9715742	Root	0.213
SRR9715743	Root	0.143

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.122
SRR8749028	MeJA induced 9h	0.016
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.752
SRR8400027	Control - Root	1.131