Gene detail

Gene detail information of Glyur003026s00039439

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G14470.1	1.00E-32	NB-ARC domain-containing disease resistance protein
NR	XP_004498673.1	4.72E-144	PREDICTED: putative disease resistance RPP13-like protein 1-like isoform X1 [Cicer arietinum]
COG	YP_008031.1	5.00E-06	hypothetical protein pc1032 [Candidatus Protochlamydia amoebophila UWE25]
Swissprot	tr\|Q9LRR4\|R13L1_ARATH	6.00E-59	Putative disease resistance RPP13-like protein 1
trEMBL	tr\|G7I789\|G7I789_MEDTR	1.00E-130	NB-ARC domain disease resistance protein {ECO:0000313\|EMBL:AES60459.1}

Sequence

Transcript Sequence

>Glyur003026s00039439.1
CTGAGGCAGAGTATACTCTACACTACACTGCTCTTTCTTCTTGTGAACCTATTCTTGTTTTCCTATTCTTCTGGTGAACTAAGGAACTTGATGGCCACTATTGTTGCAGAAGCACTCCTCTCAGCTTCTGTGGAGCTGTTGTTAGAAAAAATCATTTCTGGTGAGTTCGCGGACTTCTTTCGGAGGACCAAGCTTGATAAGTCACTCTTGGAAAAGATGGAAACAACACTGCTGAGTCTTCAAGCTGTGCTTAACGATGCTGAGGAGAAACAGATCACCAATCCTGCTGTCAAGCAATGGCTAGATAAGCTGAGAGATGCTGTCTTTGAAGCTGAGGATTTGTTCGACGAAATCAACACTGAGGCATTGCGATGCAAAGTGAAAGCTGAGTATCAAGGCCAATCTGTGAGAGCTAAGGTGCGGAACATCTTTTCTTCTCGTTTCAAAAGGTCTTATGGGGTGATCAATTCTAATATGCAAGCATTGTTTGAAAGATTGGAACACTTGCAAAAGCAGAATCTTGGATTGAAAGAAAGTGTTTCCGGCAGTGTTTGGCAGGGAACTCCAACAGTTTCCTTGGTAGATGAACCTTCTATTTGTGGCAGAAAAGATGACAAAAAGAAACTTAAAAAGTATCTGCTGTCAGAAGATGCCGGTGATGGTGGCAGTAAAATAGGAGTGGTTTCCATTGTGGGCATGGGAGGGCTGGGTAAAACAACCCTTGCCAAACTCCTGTACAATGATCCGGAAGTGGAAGAGAAGTTTCATCTGAAAGCGTGGGCACATATCTCAAAGGATTTCGATGTTTGCAGGTTCACTAAAACCCTTCTTGAATCTGTCACTTCAAAGAAACCCGATGTTGATGACCTGAATACTCTACAACTGCAACTGCAACAAAAGCTAGGAAAATTTCACCATCTACAGGGGAAGTTGTCCATCTCAGGGCTACAAAATATTACCGACCCCTCAGATGCTTCCCGAGCAAATTTGAAGAAAAACGAACATATTGACGATTTGAAACTAAATTGGGATCAAATTGGAACTCAACAAGGTTCAAAAACTCAAAGTCTTGTACTTGAACAGTTATGGCCCTCAACAAGTTTGAAGAATCTCAACATCGAAGGCTATGGTGGAACCAACTTTCCAAATTGGTTGGGTGATTCTGCATTTGGCACCATGACATTTTATGACATGCCAGAGTGGGAGGAATGGAAAACGATTGGAGACACAGCAGCGGAGTTTCCCAATCTTAAACGTCTGTCACTGATAAGATGTCCCAAACTGAAAGAGATCGCATTCTGCAACCTTCCTTCTCTACTTGAACTTGAGTTAAGGCAATGTCATCAATTGGTGGAGTCAGGGCAGCATTTAGATGATAACAACAATGTTACAAGGCAGCCATCATCCGATGGATTCAGCCAATTGAAGCTGTCTCTTCGAAAGTTGACGATTGAAGACTTTCCCTCTCTGACGTCCTTCCCAAGAGACGGTCTGCCCAAAACCTTACAATCTCTTACTATCAATGATTGTCAGAATCTAGATTTCCTTCCTCTTGAATCCCTACACAAGTACACGTCACTCGAGTATCTACAAATATATAGGAGCTGCAATCCGATGACATCCTTTTCGTTGGGCTCTCTCCCTGTCCTCAAAAGTCTTCGACTTGGTAATTGTAATGGTCTGAAATCGATATTGATTGTAGAAGATGCGTCATTGCAGAGTCTCTCGTTTCTTACAAGCATCGAAATATGGAATTGTGATGAACTGGAGTCATTCACCCTGGGTGGATTGCCCATTCCAAACCTCATTCATCTCGAGGTGCGGCAGTGCAAGAAGCTCCATTCACTGCCAGAACTAATGATCACCTTCCCCAGCCTTGAAAATTTAAGCCTGGTTGGCCTTCCAAATCTGCAATCTTTTGGCAAAGAGGGTTTGCCAATCAATTTACGGACACTGATTGTTGGAGTAGTTGGAGGGATTACTGAGTTGGGTTTGGAACGTCTCACTTGTCTGACATGGTTGGGTATTGTGGGTGATGCCGATATGGTGAATGCACCGATGAGAACCGAAAGGCCATTGCTACCCACTTCTCTCGTAACTCTGTGGATCTCTGATCTGCATGAGATAGAATGCTTGGATGGGAAGTGGCTTCACCGTCTCACCTCTCTCCAAGAGCTTTACATTCAAGATGCTCCGAAGCTCAAGTCGTTACCAGAAGAGGGTTTGCCTTCCTCTCTTTCCGAACTGTCTATCATGGAATGTCCGAATCTCGAGTCGTTACCAGAAGAGGGATTGAATTCCCCTCTTTCCAAACTGACTATCTGGGATTGTCCGAAGCTCAAGTCGTTGACAGAAAAGGGATTGCCTTCCTCTCTTTCCCTGCTGGACATCGAGAAATGTCCATTGCTGGAAGCAAGTCTGCGGAGGAGGAAGCGAGGGAAAGAGTGGCATAAAGTTGCTCACATTCCCTTCATAAAGATCGACGACAAATTTATCACATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03026	26130	30125	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003026s00039439.1	PF00931.17	NB-ARC	203	302	2.90E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.633
SRR1783600	control	2.449
SRR1783602	moderate drought stress	4.204
SRR1811619	moderate drought stress	4.164

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.122
DRR006520	Root Summer glycyrrhizin high producing strain	3.381
DRR006521	Root Winter glycyrrhizin high producing strain	0.738
DRR006522	Root Winter glycyrrhizin high producing strain	0.800
DRR006523	Root Summer glycyrrhizin low producing strain	3.909
DRR006524	Root Summer glycyrrhizin low producing strain	3.913
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.117
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.792

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.418
SRR2868004	Drought Stress (root)	3.032
SRR2967015	Control (root)	3.085

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.260
SRR9715740	Leaf	4.958
SRR9715741	Leaf	1.200
SRR9715739	Root	1.178
SRR9715742	Root	3.495
SRR9715743	Root	2.251

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.549
SRR8749028	MeJA induced 9h	1.935
SRR8749029	MeJA induced 9h	1.642
SRR8749030	Uninduced	2.628
SRR8749031	Uninduced	0.733
SRR8749032	Uninduced	0.670

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.977
SRR8400027	Control - Root	5.407