Gene detail

Gene detail information of Glyur003023s00037167

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G19520.1	0	pentatricopeptide (PPR) repeat-containing protein
NR	XP_004499166.1	0	PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like [Cicer arietinum]
Swissprot	tr\|Q940Z1\|PPR51_ARATH	6.00E-100	Pentatricopeptide repeat-containing protein At1g19525
trEMBL	tr\|V7CV20\|V7CV20_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW32741.1}

Sequence

Transcript Sequence

>Glyur003023s00037167.1
GCTTCTTCATCTTCTTCTTCTGCTTCTTCTTCTCCGTTGGTAACTAACAGAGTGAGGCATAAACCTCAATAAACCCTAACTGGTAGATGCAGTGTCATCAAATTCAATCTCAGAGACCATGATTTGGAGAACCTTACTCTCCCGTTGCGCTTCCACTTCCAGGCACACACTCACCAAACTAAATGCCACAAAAACACTCACCACATTCCCTTCTTCTCACGACACTTGTTTCATCTCCCAACTACTACTCACCGGTCACAACAGGAACCTCCATTCCCAATCCTCTCAACTCAGCAACTCGCTCATCGACCCGGCGTTACTCCTAACTCATCAAAACGACGACGTCGTCGAAGACGATGACGACGGAACCACCAACGAGTTCCTTTCCCGATTTGCATGGACAATGCGTAAGAGNGTGAAGGAAGCATACCCCGATTGCGACAAACACACAATCGACGCCATGCTTCTCGTGATCGTCGAAAGGGTCGTTTCCGAAATGGAAAACGGCGTCGCTGCGGGNTCCGAAACGACGTCATTTTCGTCTGCTCGTTTGGGGGATTTCAGCGAGGACCTGTGGAGGACGGTGTGGGAAGTTAGTAACAAGGTGTTGGAGGACATGAACAAGGAGAGGAAGAAGGAGAAGATGAAGGGTTTCTTGCAGTGTGATGAGGTTAAAGAGATGTGCCGGTTCGCCGGCGAGGTCGGAATCCGCGGCGATTTGTTAAGGGAGCTTAGGTTTAAATGGGCACGTGAGAAGATGGAAGAGCATGAGTTTTATGAGGGTTTGGAGAAATTGAGGAAAGGGGCACAATTGGAAGAAACAGAACATGAAGAGGTTGGAAATGATGTTGTTGTTGGTGTTGCTGAGGAGGAGAAGGAGAAGGCTAAGGGTGAGGCTAAGGTTGTTGTTGGGCTTCCCAAGAGAAAAGGGAAGATAAAGTTCAAGCTTTATGGGCTTGATCTATCTGATCCCAAGTGGGGGCAAGTTGCTAATAAGATCCATGAGGCAGGAGAAGTGCATTGGCCAAAGGAGGCAAAGCCAATAACTGGGAAATGCAAACTTNTTACTGAGAAGATTCTGTCACTGAAGGAGGAGAATGAGGATGAATTGTCAACCCTGTTGGCTGAGTGGGTAGAGCTTTTACAGCCTACCAGGGTGGATTGGATCAATCTACTTGACACATTGAAGAAGCAGAATCCTCCTTTGTACTTTAAGGTGGCAGAAATGGTATTGGCTGAAGATTCATTCCAAACAAATATATCTGACTACTCTAGGCTTATTGATATGTATGCTAGAGAGAGCCGCATTGATGATACCGAGAGGATCCTTAAGAAGATGAAGGAAAAAGGTATACAACCCGATGCTTCGACAGCCAGTGCATTGGTCCACATGTACAGCAAGGTAGGTAATGTTGAACGCGCAAGGGAAGTATTTGAAGTCTTAATCNGCCAGGGTTTCCAACCAGACATAAAAACCTACAACTCAATGACCATGGCATATGTAAATGCTGGCAACCCTGGGAAGGCTGAGGCACTGATAAGGCAGATGGAGGAAAGTGATATTAAGCCCACAAAGGAAATATACATGGCATTGCTCCGATTTTATTCTCAACATGGCGATGTTAATCGAGCCACACGAATTTCAACTACTATGCAGTTTGCAGGATTCCAGCCGAGTATGGAGGCATGCACGCTGCTTATTGAGGCAGCTGCAAATGATGGTCATCCAGATAAGGCAAGGCGCGAATTTGACTACATGATACAACTTGGGCACAAGCCTGATGATAGGTGCACTGCTGCCATGATTGCGGCTTATGAGAAGAAAAATTTATTGGACAAGGCATTGAATCATCTTTTGGAGTTAGAGAAGGATGGTTTTGAGCCTGGAGTTGCAACTTATTCTGTTTTGGTGGACTGGTTGTCTAAAATGCTGCTTGTTGATGAGGCTGAACAGCTTTTAAACAAAATTGCTCTGCTGGGTGAGGCTCCTCCTCTTAGGGTTCAAGTGAGTCTCTGTGATATGTATGCAAGGGCTGGAATGGAGAAAAAGGCCCTTCAAATGCTGGGCGTTCTGGAAGCTAGGAAGGATGAATTAAGACCAGATGAGTTTGAGAGAATTATATACGGCNTTAATGGTGCTGGGTTTCATCGGGATGCACAAAGAATGTTCGGGATCATGAAGGCACAGGGTTTCACTGCATCAGAAAATCTTACCTTAGCCCTTAAATCTGGCCGCCCACTAAGTAGGAGGTAGTTTAATGATATCATGAGAAGTGCCATGTCTGTCTTTCTCTGCCAAGGGACCAACAAATGCACTCCTTTATTAAGGAAGCCATGGTCTGCTCGATTGACCATACCATGTAACCAATAAAGGATTGAGTTTATGCTTGATAAATTGTTAGTTTCTCACTTGTATCATGTTTATGAATTTTGCCATGGTTATGTATTTGCAAGTGTTCACAAATTACTGATTCACTTTACTTAATATTCTTGATCAATTAATTGCTTATGTATAAAATATCATGCAAACTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03023	10843	14345	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003023s00037167.1	PF13041.1	PPR_2	384	428	9.20E-08
Glyur003023s00037167.1	PF01535.15	PPR	453	482	3.30E-05
Glyur003023s00037167.1	PF13812.1	PPR_3	522	554	0.0081
Glyur003023s00037167.1	PF01535.15	PPR	561	587	0.32
Glyur003023s00037167.1	PF01535.15	PPR	593	617	0.14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	41.018
SRR1783600	control	41.114
SRR1783602	moderate drought stress	43.318
SRR1811619	moderate drought stress	42.765

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	39.587
DRR006520	Root Summer glycyrrhizin high producing strain	38.465
DRR006521	Root Winter glycyrrhizin high producing strain	11.867
DRR006522	Root Winter glycyrrhizin high producing strain	11.341
DRR006523	Root Summer glycyrrhizin low producing strain	30.414
DRR006524	Root Summer glycyrrhizin low producing strain	30.332
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.272
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.329

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	29.178
SRR2868004	Drought Stress (root)	17.333
SRR2967015	Control (root)	19.175

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.109
SRR9715740	Leaf	10.572
SRR9715741	Leaf	7.959
SRR9715739	Root	23.487
SRR9715742	Root	27.899
SRR9715743	Root	26.296

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	66.915
SRR8749028	MeJA induced 9h	37.430
SRR8749029	MeJA induced 9h	31.804
SRR8749030	Uninduced	4.540
SRR8749031	Uninduced	2.991
SRR8749032	Uninduced	3.955

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.432
SRR8400027	Control - Root	26.588