Gene detail information of Glyur003023s00037166 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G36550.1 | 7.00E-29 | ARM repeat superfamily protein |
| NR | AFK37115.1 | 3.00E-103 | unknown [Lotus japonicus] |
| Swissprot | tr|O23225|PUB5_ARATH | 7.00E-32 | U-box domain-containing protein 5 |
| trEMBL | tr|I3SA23|I3SA23_LOTJA | 1.00E-103 | Uncharacterized protein {ECO:0000313|EMBL:AFK37115.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03023 | 4939 | 6628 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| -- |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.902 |
| SRR1783600 | control | 4.383 |
| SRR1783602 | moderate drought stress | 2.183 |
| SRR1811619 | moderate drought stress | 1.991 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.976 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.839 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.983 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 27.163 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 25.072 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.387 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.608 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.916 |
| SRR2868004 | Drought Stress (root) | 14.223 |
| SRR2967015 | Control (root) | 9.458 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.409 |
| SRR9715740 | Leaf | 1.818 |
| SRR9715741 | Leaf | 3.910 |
| SRR9715739 | Root | 2.695 |
| SRR9715742 | Root | 3.907 |
| SRR9715743 | Root | 4.843 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.156 |
| SRR8749028 | MeJA induced 9h | 3.969 |
| SRR8749029 | MeJA induced 9h | 3.791 |
| SRR8749030 | Uninduced | 3.841 |
| SRR8749031 | Uninduced | 1.605 |
| SRR8749032 | Uninduced | 0.832 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.453 |
| SRR8400027 | Control - Root | 4.383 |