Gene detail information of Glyur003021s00042240 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G02050.1 | 2.00E-33 | Mitochondrial glycoprotein family protein |
| NR | XP_007140470.1 | 6.28E-78 | hypothetical protein PHAVU_008G115200g [Phaseolus vulgaris] |
| Swissprot | tr|Q8W487|YB95_ARATH | 1.00E-30 | Uncharacterized protein At2g39795, mitochondrial (Precursor) |
| trEMBL | tr|V7B3R1|V7B3R1_PHAVU | 2.00E-78 | Uncharacterized protein {ECO:0000313|EMBL:ESW12464.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03021 | 10850 | 13177 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003021s00042240.1 | PF02330.11 | MAM33 | 77 | 230 | 8.00E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.480 |
| SRR1783600 | control | 8.650 |
| SRR1783602 | moderate drought stress | 4.878 |
| SRR1811619 | moderate drought stress | 4.739 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.466 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.896 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.956 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.312 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.887 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.106 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.661 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.514 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.585 |
| SRR2868004 | Drought Stress (root) | 0.997 |
| SRR2967015 | Control (root) | 1.126 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.471 |
| SRR9715740 | Leaf | 0.548 |
| SRR9715741 | Leaf | 0.356 |
| SRR9715739 | Root | 0.797 |
| SRR9715742 | Root | 2.188 |
| SRR9715743 | Root | 1.123 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.207 |
| SRR8749028 | MeJA induced 9h | 1.810 |
| SRR8749029 | MeJA induced 9h | 2.031 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.161 |
| SRR8749032 | Uninduced | 0.326 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.321 |
| SRR8400027 | Control - Root | 1.861 |