Gene detail

Gene detail information of Glyur003018s00043421

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G51800.3	8.00E-100	metallopeptidase M24 family protein
NR	ABF66654.1	1.49E-164	EBP1 [Ammopiptanthus mongolicus]
COG	YP_003436876.1	2.00E-16	methionine aminopeptidase, type II [Ferroglobus placidus DSM 10642]
Swissprot	tr\|Q56Y85\|MAP22_ARATH	3.00E-12	Methionine aminopeptidase 2B {ECO:0000255\|HAMAP-Rule:MF_03175}
trEMBL	tr\|A0EVX1\|A0EVX1_9FABA	6.00E-165	EBP1 {ECO:0000313\|EMBL:ABF66654.1}

Sequence

Transcript Sequence

>Glyur003018s00043421.1
GAAACCCTAGTTAATTGCAATACTGCTACTGAGCCACTTAACCCCTTTCCTTCCTTCACGGACTCTGAATCATAAGTAAGTGACAGGGATTCATAGATAGGCGAAGAAGCTACCATGTCAGACGATGAGAGAGAGGAGAAGGAGTTGGATCTCACTTCACGCAATGTGGTCACCAAGTACAAGAGCGCAGCAAAGATCCTTAGCAAGGCTTTGAAGTTAGTTGTTTCAGAATGTAAACCGAAGGCCAAGATTCTTATGGGGTGTACTGTGTTTTTTAAAATAAGGCAAACCGGTAACATGTACAAGAATGTGAAGAGGAAGATTGAGATGGGTGTTGCATTCCCAACGTGCATATCTATAAACAACACTGTCTGTCATTTCTCTCCTCTCGCCAGTGACGAAACAATGTTGGAAGAAGGTGATATACTGAAAATTGATATGGCTTGTCATATAGATGGGTTCATTGCTGCTGTGGCGCACACTCATGTTCTTCAAGAGGGGCCAGTTACAGGACGAGCAGCTGAAGTGGCCTTGAGGCTTGGGAGGCCAGGAAGGAAGGTTGCTGCTGCTTACGATTGTAAGATTGTTGAGGGTGTTCTAAGCCACCAAATGAAGCAATTTAAGCAATTTGTGATTAACGGGAGTAAGGTTGTGCTTAGTGTATCGAATCTAGATACAAGGGTGTGGATGATGCAGAGTTTGAGGAGAATGAAGTTTATGCAATTGCTAGCACTGGAGAAAGCAAGCCTAAGTTGTTGGATGAGGGCTGTTGGCAGAAGTTATCACTTGAAGATGAAAGCATCTAGGTTCATTTTCAATGAAATAAGCCAAAAATTCCCTATCATGCCATTCTCTGCCAGGGCTTTGGAGGAGAAACGGGCGCGTTTGGGTTTCTTGGAATGCATGAATCATGAGCTCCTGCAGCCTTATCCTGTTCTACATGAAAAGCTTGGTGATTATGTTGCACACATCAAATTCACATCTCATCCACTCCAGGAATTGCAGCCCACCAAAACAATAGATGATCCTGAAATTAAGGCCTGGCTAGCATTGAGCAGAAAGACAAAGAAGGGTTGTGGAAAGAAGAAAGGTATGCTGGAAGCCTAAGGGGTCTGTTTGTTTGATTTAAACTTAAAAAGTGATTTTAAACTTTTGTAAAAAAGCGATTTGCTTTTTTAGAGATTTTATATAAAGTAGAAATTTTGTTCGGTTACAATTTTGAAAAACACTTTATTTTAAAAGATAAAGTTATAGATAAAGAGCCAGTTTGGATAAAAATATTTATAAGCACTTGTAACATGAGTTTTTTAACTAATAGTTTCTCATATAAGTTGAATTTAGCTTTTGCACTTCACTTTTTTTAACCTCGAGATAAACACTAATCTATTTATCAATGACTATTTAACAGTTTTTCTTCTTTTCCATATATGAGAAAAATAATACTAATTTCTCTATAAGCTAGAAGCTAGAAGCTCAAAGCTGGGCCTCTACACCCAAACTGGACCATAGTTTTTCTCAAAAGCTATCAACACAACTTTTCAAAATAATTCAAAATGATTTTCTTTAAAATTTAAATATAACACTAAATTTTTATAAATGATTTTTTCATAATTAAATTGGTGGTTTTATTAAGAAAGAGGTTGAAATACTAGCATGGTTTATTCCTTCATGCCTTGTGGGGTCACACTTGTATTTGTACTATGTCATCATGCCTTGTGTTGCCTGGTGCATGCATTGCATCATTTATGTGATGACTCAAATATCTATGATGTTGACCCTGTTTTTTGTGAGCTATTTGTCAAATTGGGGTTCAAGAAATGTTTGGTTGTTTGCGGCTAAGAAGGGGGAAGGTGAAGTGAACCCATGGAGGCAACAAATGGTGCCATAACACGAGCAAGATTGATGGAGTCTCCCTAAAAAAGTCCCTTTGATTTTTTACTTTTGACTCCTTTCAATTTTGGTACATTTTTCACCTAGTTGTTTGTATCTGCTTGAAATGTGAATTTAGCATAGCATTTGGACAAACAATGTCTCCCTAGTTGAATGCTATACGCCTAATTAAGCAAAAATATGTTTTGTTGGTGAGTTTTATTTAAAAGAAAATGATATCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03018	13769	22404	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function

GO:0004177 aminopeptidase activity

GO:0008235 metalloexopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003018s00043421.1	PF00557.19	Peptidase_M24	21	141	1.40E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	3.108
SRR1811619	moderate drought stress	3.070

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.515
DRR006520	Root Summer glycyrrhizin high producing strain	7.380
DRR006521	Root Winter glycyrrhizin high producing strain	6.739
DRR006522	Root Winter glycyrrhizin high producing strain	6.755
DRR006523	Root Summer glycyrrhizin low producing strain	8.764
DRR006524	Root Summer glycyrrhizin low producing strain	8.800
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.767
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.607

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.944
SRR2868004	Drought Stress (root)	10.471
SRR2967015	Control (root)	11.082

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.567
SRR9715740	Leaf	1.469
SRR9715741	Leaf	1.859
SRR9715739	Root	0.262
SRR9715742	Root	1.758
SRR9715743	Root	1.190

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.507
SRR8400027	Control - Root	0.612