Gene detail

Gene detail information of Glyur003013s00037045

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G62620.1	5.00E-118	Flavin-binding monooxygenase family protein
NR	XP_004511006.1	0	PREDICTED: flavin-containing monooxygenase FMO GS-OX5-like [Cicer arietinum]
COG	YP_005086914.1	5.00E-50	Dimethylaniline monooxygenase [Pseudovibrio sp. FO-BEG1]
Swissprot	tr\|Q9SXD5\|GSXL3_ARATH	1.00E-159	Flavin-containing monooxygenase FMO GS-OX-like 3
trEMBL	tr\|G7LEJ7\|G7LEJ7_MEDTR	0	Flavin-containing monooxygenase {ECO:0000256\|RuleBase:RU361177}

Sequence

Transcript Sequence

>Glyur003013s00037045.1
AATTTAATTAATATGTACTGTTAGTATACAAATATCTTATACAGACGTCCTTAAATATTTTAATTAAGGTGTTGATCCAGAGAGCTTTAAATAAAACGTCGTCGCAAAAACCCAACCTTTTGCATTCAACAACTCTCCATGGCTCCTCCGTCGGTGAAAGTTGCGGTAATCGGAGCCGGAGCCGCCGGACTCGTCGCCGCCAAGGAGCTCCAAAGGGAAGGCCTCGACGTCGTCGTTTTCGAGAAGAACAACCGCATCGGGGGCACATGGGTGTACGACCCGAAAACAGAATCCGATCCAATCGGCACAGACCCGACCCGAGAAACCGTCCACAGCAGCATGTACCTGTCGCTACGCACGAATCTCCCGAGGCAGCTCATGGGGTTCATAGATTACCCCTTCTCGAAGTGCGAATCGGGTGACCCGAGAACGTTCCCGGGTAACGAGGAAGTGCTCCGTTTCCTGGATGAGTTTGCGTGCGAGTTCGGGATCTACGGGTTGATCCGGTTTGAAACGGAGGTGGTGAAGGTGGAGAGGGAAGAGAAGGGGAACGAGTGGGTGGTCGAGTCGAGGCCGACTCGGGGTGGTGACTCNGTGAGTCGGGAGGTGTTCGACGCGGTCGTTGTTTGTTCGGGTCACTTTGTTGAACCGAGACTCAGTGAGGTTCCGGGAATTGAAACTTGGCGTAGGTTTCAAATGCATTCACACAATTACAGAGTGCCTCACCCTTTCAAAGANCAGGTTGTGATTTTTATTGGGCTTGGACCTAGTTCCTTTGACATCTCAAGTGATGTTGCACGAGTAGCAAAGGAAGTTCATGTTGCAACAAGATTGAATCCAGATTTAAAGGGTATGAAGTTGGAAAATGTTGGCAATATATGTTTCCATACCTCGATCAAATGTGTATATGAAGATGGCTTGGTTGCCTTTGAAGATGGATTCTCTATTTATGCGGATGCCATAATTCACTGTACAGGATACAAGTACCACCATCCATTCCTTGAAGCCAATGGAATAGTAACCGTTGATGATAATCGAGTTGGGCCACTATACAAACACATCTTTCCTCCTGCACTGGCTCCATGGCTCTCTTTCATTGGTTTAACCTTTAAGGATGCATTGTTCCATATAATGGAGTTACAATCCAAGTGGGTTGCAAGAGTTTTATCGGGTAAGATTCTATTACCTACGGAAGAGGAGATGATGGAATCTGTTAAAGACTTCTATCAATTCATGAAAGAAAATGGGTTGCCCAAGCGTTACACACATTCCCTTCGTCCATTTCAGGTTGACTACAAACATTGGCTAGTGGCACAAATTGGGTTGCCTCCATTGGAAGATTGGAGGGAGAATATGTATAGAGTGTGTTTTAAGAATTTAGTCGAAATGAAGGAGGCATACAGAGATGAATGGGATGATAACTATTGGGATGCCATCATTCAAAGTGAATCACCTTCCCAAAATCAAAGATAATGCATGTCTCATGCAAANTTTTGAATTGGGTTGTCTCAAAAAACCAGTTTTAAGTATTTGGTTGAGTTTTCTTGATCAGGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03013	1496	4602	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0004499 N,N-dimethylaniline monooxygenase activity

GO:0050660 flavin adenine dinucleotide binding

GO:0050661 NADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003013s00037045.1	PF00743.14	FMO-like	7	231	2.80E-37
Glyur003013s00037045.1	PF00743.14	FMO-like	244	363	9.80E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	44.826
SRR1783600	control	45.257
SRR1783602	moderate drought stress	62.160
SRR1811619	moderate drought stress	62.003

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	60.810
DRR006520	Root Summer glycyrrhizin high producing strain	59.997
DRR006521	Root Winter glycyrrhizin high producing strain	85.128
DRR006522	Root Winter glycyrrhizin high producing strain	82.705
DRR006523	Root Summer glycyrrhizin low producing strain	35.927
DRR006524	Root Summer glycyrrhizin low producing strain	35.860
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.598
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.714

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.900
SRR2868004	Drought Stress (root)	14.822
SRR2967015	Control (root)	21.408

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.157
SRR9715740	Leaf	0.682
SRR9715741	Leaf	1.214
SRR9715739	Root	20.858
SRR9715742	Root	29.644
SRR9715743	Root	28.976

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.589
SRR8749028	MeJA induced 9h	11.888
SRR8749029	MeJA induced 9h	11.142
SRR8749030	Uninduced	26.238
SRR8749031	Uninduced	29.299
SRR8749032	Uninduced	25.630

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.488
SRR8400027	Control - Root	36.989