Gene detail information of Glyur003011s00033765 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G47380.1 | 8.00E-20 | Cytochrome c oxidase subunit Vc family protein |
| NR | AES82189.2 | 1.56E-42 | cytochrome C oxidase subunit 5C [Medicago truncatula] |
| Swissprot | tr|Q9LZQ0|CX5C2_ARATH | 1.00E-34 | Cytochrome c oxidase subunit 5C-2 |
| trEMBL | tr|G7KST8|G7KST8_MEDTR | 6.00E-43 | Cytochrome C oxidase subunit 5C {ECO:0000313|EMBL:AES82189.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03011 | 5114 | 7009 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 24.748 |
| SRR1783600 | control | 24.667 |
| SRR1783602 | moderate drought stress | 16.188 |
| SRR1811619 | moderate drought stress | 16.135 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 63.671 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 63.853 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 48.027 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 46.960 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 45.619 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 45.675 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 40.106 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 39.818 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 137.491 |
| SRR2868004 | Drought Stress (root) | 118.871 |
| SRR2967015 | Control (root) | 102.019 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 100.390 |
| SRR9715740 | Leaf | 86.013 |
| SRR9715741 | Leaf | 93.127 |
| SRR9715739 | Root | 62.497 |
| SRR9715742 | Root | 49.446 |
| SRR9715743 | Root | 52.974 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 41.031 |
| SRR8749028 | MeJA induced 9h | 32.892 |
| SRR8749029 | MeJA induced 9h | 44.081 |
| SRR8749030 | Uninduced | 20.162 |
| SRR8749031 | Uninduced | 21.190 |
| SRR8749032 | Uninduced | 19.491 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 96.047 |
| SRR8400027 | Control - Root | 98.390 |