Gene detail information of Glyur003011s00033764 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G62410.1 | 8.00E-31 | CP12 domain-containing protein 2 |
| NR | XP_004495904.1 | 1.33E-56 | PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Cicer arietinum] |
| COG | YP_005069080.1 | 1.00E-12 | hypothetical protein [Arthrospira platensis NIES-39] |
| Swissprot | tr|Q9LZP9|CP122_ARATH | 4.00E-38 | Calvin cycle protein CP12-2, chloroplastic (Precursor) |
| trEMBL | tr|B7FGI5|B7FGI5_MEDTR | 5.00E-49 | Uncharacterized protein {ECO:0000313|EMBL:AFK43368.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03011 | 2065 | 2472 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003011s00033764.1 | PF02672.10 | CP12 | 65 | 135 | 2.30E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.294 |
| SRR1783600 | control | 0.789 |
| SRR1783602 | moderate drought stress | 17.623 |
| SRR1811619 | moderate drought stress | 17.080 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.350 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.059 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 131.075 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 123.890 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.198 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.647 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2318.566 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2328.644 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.122 |
| SRR2868004 | Drought Stress (root) | 11.532 |
| SRR2967015 | Control (root) | 15.550 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 749.215 |
| SRR9715740 | Leaf | 941.891 |
| SRR9715741 | Leaf | 761.007 |
| SRR9715739 | Root | 0.475 |
| SRR9715742 | Root | 1.212 |
| SRR9715743 | Root | 0.390 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.737 |
| SRR8749028 | MeJA induced 9h | 7.911 |
| SRR8749029 | MeJA induced 9h | 5.448 |
| SRR8749030 | Uninduced | 12.413 |
| SRR8749031 | Uninduced | 14.674 |
| SRR8749032 | Uninduced | 62.759 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.442 |
| SRR8400027 | Control - Root | 2.436 |