Gene detail

Gene detail information of Glyur003002s00037319

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G05700.1	6.00E-80	Leucine-rich repeat transmembrane protein kinase protein
NR	XP_006585557.1	8.06E-135	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g28960-like [Glycine max]
COG	YP_007319008.1	1.00E-07	hypothetical protein FAES_0403 [Fibrella aestuarina BUZ 2]
Swissprot	tr\|C0LGD6\|Y1570_ARATH	2.00E-85	Probable LRR receptor-like serine/threonine-protein kinase At1g05700 (Precursor)
trEMBL	tr\|K7L7R8\|K7L7R8_SOYBN	6.00E-134	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G21321.1}

Sequence

Transcript Sequence

>Glyur003002s00037319.1
ATGGAAAGAAGAGAATTACCACCACGGCTTAATGTCCCCTTCATGTTAAACGCATGCATATTGCTGCTTGCCTTGGTTCCCCTTTGCATTCCTCGTGCCANTTCAGAACTAGACAAACCTGTTGCCAGAGACGATGAGCAATATCCCGGTTCCATAAGCATTGATTGTGGATCAATCATGGATTACCAAGACGAGGACAGTGGAATTTGGTATCAGACAGACAAAGGCTTTGTGGAAACAGGAATAAATGATCAGGTGACTTCATCCACTTTCGACAACTTACGCTACTATGGGAAACAGTTGAACACATTGAGATACTTTCCAGAAGGAGAAAGAAACTGCTACACATTGAAACCAAAACGGGGCAAGAATAATAGGTACCTCATCAGGGCTTTCTTTGCATATGGAAATTATGATGACAAAAACCAAACCNCATCTTTTGAACTGCATCTTGGAGTCAATCTCTGGCGCAAAATTAATATTACTAGTGAATCTATATATACTGTGAGGGAGGTCATTCACACTCCCTCAAGTGACACTATACATGTGTGCCTTGTAAAGACTGGTCCAACAATCCCTTTCATTTCTTCTTTGGAATTTAGGCCTTTGATGAACAGTTCCATTTATCAGAATCTGCAGAACATGCCCAGTAGTGATCCACAACCATTGTTAGCTCTTCAACTCAGGGTTGATGTTGGCTCGCCTCAATTGCCTGCGCCTTATTATAACCGGTACCATGATGACAACTATGATCGGGTGTGGCGATGNGACCCAAATTACAAGCAAAATGGTTGGTTTCCGTTGTGGAATCAGTCGATTGAGATTGGCGATATCGCATACAATTTGCCATCCGAAGTATGGAGGAATGCAGCCGAATCACCGAATGTTTCCTCCTCCTTACGATTCAACTATGGGGAAGTCTTTAGTCCCCTCGAGTTGTCGTTTGAGTATTATGTCTACTTCCACTTCGCTGAAATTGAGCAACTCCCGGCAGGGCAAAAAAGGATAATCGACATCACAATTAACTCCACACGCATCCTCTCCAAGCCTTTGGTTCTTGAATACTTGAAGCCCGTTACTCTTAATCACGTGACTCCAGGTTTTGTTGAGTTCAGCATTACTGCAACTTCCAATTCGGATGCTCCCCCTATCCTCAATGCCTTTGAGATCTATAAATCTCTAGATCGAATTGGCAAGGTGACCCATGTCTTCCTAAACAATATGCATGGGAAGGTCTCGTTTGCACTTCTGTCGACAGAACCTGAGCTCAAGCAAACTGACAGGGCATATAATTATTTCATTCTCATATCTTACAGAACTAGAATCCCTGGATTTGTCACACAACCAGTTGGAAGGACCTGTGCCAGAATTTCTGGCAAAATTGCCAAAGTTACAAATAAGATGGAAAGAAGAGAATTACCACCACGGCTTAATGTCCCCTTCATGTTAAACGCATGCATATTGCTGCTTGCCTTGGTTCCCCTCTGCATTCCTCGTGCCAATTCAGAACTAGACAAACCTGTTGCCAGAGACGATGAACATCCCGGTTTCATAAGCATTGATTGTGGATCAAGCGTGGATTACCAAGACGAGGACAGTGGAATTTGGTATCAGACAGACAAAGGCTTTGTGGAAACAGGAATAAATCAGGTGACTTCATCCATTTTCGACAACTTACGCTACTATGGGAAACAGTTGAACACATTGAGATACTTTCCAGAAGGAGAAAGAAACTGCTACACATTGAAACCAAAACAGGGCAAGAATAATAGGTACTTCATCAGGGCTTTCTTTGCATATGGAAACTATGATGGCAAAAACCAACCCCCATCTTTTGAACTGCATCTTGGAGTCAATCTCTGGTTCAAAATTAATATTACTAGTGTATCTCAAGTGAGGGAGGTCATTCACACTCCCTCAAGTGACACTATAGATGTGTGCCTTGTAAAGACTGTTCCATTTATCAGAATCTGCAGAACATGCCCAGTATCGATTGAGATTGGCGATGGCGACTCATACAATTTGCCATCCCAAGTATGGAGGAGTGCAGCCCAATCACCGAATGTTTCCTCCTCCTTACGATTCAACTATGAGAAAGTCTTCCGTCCCCTCCTCTACTTCTCGTATGAGTATTATGTCTACTTCCACTTCGTTGAAATTAAGCAACTCTCGGCGGGGCAAAAAAGGATAATCGACATCACAATTAACTCCACACGCATCCTCTCCAAGCCTTTGGTTCTTGAATACTTGAAGCCCGTTACTCTTAATCATGTGACTCCAGGTTTTGTTGAATTCAGCATTACTGCAACTCCCAAATCAGATGCTCCTCCTATCCTCAACGCCTTTGAGATCTATAATTGTGCTATTGTGGATATCAAAAGCGTCTACAAGATCTCTAGATCGAATTGGCAAGGTGACCCGTGTCTTCCTAAACAATATGCATGGGAAGGTCTCGTTTGCACTTCTGACAGTGACACCAATCCAAGGATCACATCTTTGAACTTGAGCTCAAGCAAACTGACAAGGCAGATAATTATTTCATTCTCATATCTTACAGAACTAGAATCCCTGGATTTGTCACACAACCAGTTGGAAGGACCTGTGCCAGAATTTCTGGCAAAATTGCCAAAATTACAAGTTCTTAATCTGACAGGGAACAGGCTTTCGGGTCCAATTCCTAAGGCTCTCAAGGAAAGGGCAAATTTGCTATTAAGTGTAGCTGACAATCCTGACCTTTGCATGAAGGATTCATGCAAAAAGAAGAACTTTGTTGTACCACTTGTTGCATCACTTTCAGCTTTAACTGTAATCCTCTTGATTTCTCTTGGATTTTGGATACTCAGAAGACAAAAAGATCCACTCCAAAAGAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03002	3851	30906	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003002s00037319.1	PF12819.2	Malectin_like	54	392	9.80E-79
Glyur003002s00037319.1	PF12819.2	Malectin_like	520	655	6.10E-39
Glyur003002s00037319.1	PF12819.2	Malectin_like	668	786	9.40E-17
Glyur003002s00037319.1	PF13855.1	LRR_8	828	888	1.20E-10
Glyur003002s00037319.2	PF12819.2	Malectin_like	54	392	9.50E-79
Glyur003002s00037319.2	PF12819.2	Malectin_like	520	645	1.00E-33
Glyur003002s00037319.2	PF12819.2	Malectin_like	651	768	1.10E-16
Glyur003002s00037319.2	PF13855.1	LRR_8	810	870	1.20E-10
Glyur003002s00037319.3	PF12819.2	Malectin_like	54	392	5.20E-79
Glyur003002s00037319.3	PF12799.2	LRR_4	428	465	8.50E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.518
SRR1783600	control	0.534
SRR1783602	moderate drought stress	0.453
SRR1811619	moderate drought stress	0.388

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.254
DRR006520	Root Summer glycyrrhizin high producing strain	2.295
DRR006521	Root Winter glycyrrhizin high producing strain	0.057
DRR006522	Root Winter glycyrrhizin high producing strain	0.075
DRR006523	Root Summer glycyrrhizin low producing strain	5.192
DRR006524	Root Summer glycyrrhizin low producing strain	5.276
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.475
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.478

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.921
SRR2868004	Drought Stress (root)	3.316
SRR2967015	Control (root)	5.085

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.778
SRR9715740	Leaf	0.740
SRR9715741	Leaf	0.763
SRR9715739	Root	0.000
SRR9715742	Root	0.081
SRR9715743	Root	0.050

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.906
SRR8749028	MeJA induced 9h	0.356
SRR8749029	MeJA induced 9h	0.557
SRR8749030	Uninduced	0.196
SRR8749031	Uninduced	0.265
SRR8749032	Uninduced	0.090

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.749
SRR8400027	Control - Root	0.678