Gene detail

Gene detail information of Glyur003000s00038024

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G10770.1	oligopeptide transporter 7
NR	AES71704.2	oligopeptide transporter OPT family protein [Medicago truncatula]
Swissprot	tr\|O82485\|OPT7_ARATH	Oligopeptide transporter 7
trEMBL	tr\|G7J807\|G7J807_MEDTR	Oligopeptide transporter OPT family protein {ECO:0000313\|EMBL:AES71704.2}

Sequence

Transcript Sequence

>Glyur003000s00038024.1
ATATTATTGGACAATGCCGAGGCTCGAGGCTGGGCCCTGGTCCTGGCATTAATTTGGCCATTAATTCACCTGCAAACCATATATCGTCCTTGTGACCTCTCCCCCTCCTCTACCCTCCCACACACTCTCTCTTGGCCGAATAGTTTGCATAGAACACAGAAGATTTTATTCACAATCAAAATGGAAGGATCCTCATCACACGAGAACGAAATCACATCCCCTCTCCTATCTAAGAAGGAGGAAGAGCAAGAAGGGAATGNTGAAATTGATGAGAACTCGCCCATAAANCAAGTGGCTCTAACGGTTCCAACCACAGATGACCCATCGCTCCCAGTTCTAACCTTCCGAATGTGGGTATTGGGTACCCTCTCNTGCGTCCTCCTTTCNTTCCTCAACCAATTCTTCTGGTACCGTACCGAGCCTCTCACCATAACGGCGATCTCCGCCCAGATCGCCGTCGTGCCTTTGGGCCAACTCATGGCCTCAAAAATCACCAAACGGGTCTTCCTCAAGGGAACCCGTTGGGAATTCACCTTGAACCCTGGTCCCTTCAATGTCAAGGAACATGTCCTCATCACCATCTTTGCCAACTCTGGTGCTGGCACTGTTTATGCAATTCATATTGTTACCGCTATCAAAGTCTTTTACCATAAGCATATCTCGTTTTTTGTTTCCCTGCTTGTAGTCATCACCACTCAGGTATTAGGTTTCGGATGGGCTGGCATATTTAGAAGATACCTGGTAGAGCCAGCGGCAATGTGGTGGCCAGCAAATTTAGTCCAAGTTTCACTCTTCAGGGCCCTGCACGAGAAGGAGGAAAGGACAAAAGGAGGGTTAACGCGATCTCAGTTCTTCGTTATNTCATTCTTGTGCAGCTTCGCGTACTACGTGTTCCCGGGCTACCTCTTTCAAATGTTAACCTCTCTCTCTTGGATATGCTGGATATTCCCCAACAGCGTATTGGCCCAACAACTTGGGTCGGGCCTATATGGGCTTGGAATCGGTGCAATTGGGCTTGACTGGTCTGCCATTTCAGCCTACCTCGGGAGCCCACTTGCCAGCCCATGGTTTGCCACTGCAAACGTGGNAGTGGGGTTCGTGTTTGTTATGTACATCCTGACCCCACTGTGCTATTGGTTCAACGTGTACAATGCCAAAACCTTCCCCATTTTCTCGNACAAGCTTTTTACCTCAAGCGGTGAAGTGTATAACATCACAGACATAGTTGACTCCAATTTCCATCTGGACCTTGCGGCTTATGAGCGACAAGGACGACTCCACCTCAGCACTTTCTTTGCCATGACCTATGGCATATGGGAGCAAAGCAAGTCGAGTTTTAAGGAAATGAAAATGGACATCCACACGAAACTCATGAGGAGGTACAAACAGGTTCCTGAGTGGTGGTTCGTGTGCATACTCATCGCAACCATTGCAGGTACCGTTTTTGCCTGTGAATATTACAACGACCAGCTGCAGTTGCCTTGGTGGGGTGTTCTGCTGGCATGTGGCATTGCCATCTTCTTCACTCTCCCCATTGGCATAATAACTGCAATCACAAATCAGAGCCCGGGCCTGAACATAATAACGGAGTACATCATAGGGTATATCTACCCGGGNTATCCTGTAGCTAACATGTGCTTCAAGGTTTATGGTTACATTAGTATGTCTCAAGCCATCACTTTCTTGCAAGACTTCAAGCTCGGCCACTACATGAAAATCCCTCCCAGAACCATGTTCATGGCACAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03000	7849	13952	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003000s00038024.1	PF03169.10	OPT	113	582	5.30E-129

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.731
SRR1783600	control	1.630
SRR1783602	moderate drought stress	2.151
SRR1811619	moderate drought stress	2.205

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.062
DRR006520	Root Summer glycyrrhizin high producing strain	0.112
DRR006521	Root Winter glycyrrhizin high producing strain	0.064
DRR006522	Root Winter glycyrrhizin high producing strain	0.062
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.323
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.133

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.970
SRR2868004	Drought Stress (root)	7.718
SRR2967015	Control (root)	12.400

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.755
SRR9715740	Leaf	4.041
SRR9715741	Leaf	1.974
SRR9715739	Root	0.534
SRR9715742	Root	0.623
SRR9715743	Root	0.386

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.058
SRR8749028	MeJA induced 9h	0.266
SRR8749029	MeJA induced 9h	0.046
SRR8749030	Uninduced	0.207
SRR8749031	Uninduced	0.239
SRR8749032	Uninduced	0.812

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.344
SRR8400027	Control - Root	1.725