Gene detail

Gene detail information of Glyur002999s00043471

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G13930.1	7.00E-169	Chalcone and stilbene synthase family protein
NR	KEH35361.1	0	chalcone and stilbene synthase family protein [Medicago truncatula]
COG	YP_004643652.1	1.00E-42	chalcone and stilbene synthase domain-containing protein [Paenibacillus mucilaginosus KNP414]
Swissprot	tr\|Q9SBL5\|CHS4_SORBI	0	Chalcone synthase 4
trEMBL	tr\|A0A072V123\|A0A072V123_MEDTR	0	Chalcone and stilbene synthase family protein {ECO:0000313\|EMBL:KEH35361.1}

Sequence

Transcript Sequence

>Glyur002999s00043471.1
GTAATATAATTGCCTTTACTCATATATACCACTCTATATATCTATCAACTTTGCTCTATTAATTCCCCCGGTGAAATTAATCAGAAAATGGCATACTTAGAAAATATTCGAGAGGCGCAAAGAGCTCATGGCACAGCTGCCATATTAGCCATTGGTACCGCAAATCCAACCAATTGCATTTACCAATCTGACTTTACCGATTATTACCTACGAATGACCAAAAGCGAGCACAAGACTGAACTCAAGGCCAAGTTGCAGCGCATATGTGACAAGTCAATGATAAANAAGCGTTACATACACTTAACCGAAAAGATTCTGAAAGAAAACCCCAACATATGCAGCTTTGANGAACCATCCCTTGATGAACGCCAAGACATGTTGGTTGTTGAGGTGCCAAAACTTGGTGAGAAGGCAGCATCGAAAGCCATCAAGGAATGGGGTAGGCCCAAGTCAGAGATCACTCATCTCATATTTTGTTCCACCGCTGGTGTGGATATGCCCGGTGCTGACTATCAGCTNGTCANGCTCTTAGGCCTCAAACCATCCACCAAAAGGTTCATGCTTTACCATCAGGGTTGCTTCGCCGGTGGCACCGTGCTTCGTCTCGCTAAGGATCTCGCTGAGAACAACTTTGGTGCACGTGTCCTCGTGGTGTGTTCTGAGCTCACAGTTACTACCTTTCGTGGACCCTCTGAATCACACATGGACTCATTGGTGGGACAAGTGCTCTTCGGTGATGGTGCTTCATCCGTGATCGTTGGATGCAACCCTGANCCCTGTGTCGAACGGCCGATATTCTACCTTGTCACTGCATCAGAGACGATTCTACCGAACTCTGAAGGTGCAATTGAGGGACACCTACGCGAGGTGGGACTCACGTTTCATCTCAAGGATAATGTCCCCCAGTTGATTGGGGACAACATAGAGAAAAGCCTCAAAGAGGCTTTTCACCCACTTGGAATCAGGGATTGGAACTCGTTGTTTTGGATATCCCACCCAGGTGGACCTGCAATCTTGAAGAAAATAGAGGCAATGCTTGGGTTGAAACCGGATAAACTGAGGGNGACTAAGCATGTTCTGAGTGAGTATGGGAACATGTCAAGTGCGTGTGTGCTTTTTATACTGGATGAGATGAGGAAGAGGTCTGTGGAGGAAGGGAAATCCACCACCGGTGAAGGACTGAAATGGGGTGTTTTATATGGATTTGGTCCTGGCTTGACTATGGAGACGATTACTTTGCATAGTGCCCCCATAAAATCGGGCTACTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02999	7967	10138	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00660	CHS	EC:2.3.1.74	Flavonoid biosynthesis	map00941
			Circadian rhythm - plant	map04712

Gene Ontology

biological_process

GO:0008152 metabolic process

GO:0009058 biosynthetic process

molecular_function

GO:0003824 catalytic activity

GO:0016746 transferase activity, transferring acyl groups

GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002999s00043471.1	PF00195.14	Chal_sti_synt_N	4	228	4.30E-116
Glyur002999s00043471.1	PF02797.10	Chal_sti_synt_C	239	387	7.40E-71

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.261
SRR1783600	control	0.276
SRR1783602	moderate drought stress	1.137
SRR1811619	moderate drought stress	1.190

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.085
DRR006520	Root Summer glycyrrhizin high producing strain	0.084
DRR006521	Root Winter glycyrrhizin high producing strain	4.103
DRR006522	Root Winter glycyrrhizin high producing strain	3.902
DRR006523	Root Summer glycyrrhizin low producing strain	0.172
DRR006524	Root Summer glycyrrhizin low producing strain	0.168
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.109
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.218

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.571
SRR2868004	Drought Stress (root)	3.587
SRR2967015	Control (root)	4.932

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.083
SRR9715740	Leaf	0.812
SRR9715741	Leaf	5.103
SRR9715739	Root	0.247
SRR9715742	Root	0.306
SRR9715743	Root	0.102

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.162
SRR8749028	MeJA induced 9h	0.185
SRR8749029	MeJA induced 9h	0.048
SRR8749030	Uninduced	4.767
SRR8749031	Uninduced	4.640
SRR8749032	Uninduced	0.494

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.368
SRR8400027	Control - Root	1.372