Gene detail information of Glyur002997s00043750 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G09380.1 | 3.00E-48 | RNA polymerase III RPC4 |
| NR | XP_003550619.1 | 1.56E-101 | PREDICTED: uncharacterized protein LOC100802173 [Glycine max] |
| trEMBL | tr|I1MSB8|I1MSB8_SOYBN | 6.00E-102 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G05820.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02997 | 3164 | 4624 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002997s00043750.1 | PF05132.9 | RNA_pol_Rpc4 | 72 | 185 | 9.30E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.794 |
| SRR1783600 | control | 6.706 |
| SRR1783602 | moderate drought stress | 5.671 |
| SRR1811619 | moderate drought stress | 5.059 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.402 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.367 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.873 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.702 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 19.486 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 18.270 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.085 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.468 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.519 |
| SRR2868004 | Drought Stress (root) | 0.619 |
| SRR2967015 | Control (root) | 1.184 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.889 |
| SRR9715740 | Leaf | 1.596 |
| SRR9715741 | Leaf | 2.223 |
| SRR9715739 | Root | 0.332 |
| SRR9715742 | Root | 2.302 |
| SRR9715743 | Root | 1.160 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.073 |
| SRR8749028 | MeJA induced 9h | 1.814 |
| SRR8749029 | MeJA induced 9h | 1.061 |
| SRR8749030 | Uninduced | 1.503 |
| SRR8749031 | Uninduced | 0.084 |
| SRR8749032 | Uninduced | 9.026 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.583 |
| SRR8400027 | Control - Root | 2.232 |