Gene detail

Gene detail information of Glyur002994s00043324.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G57150.1	2.00E-61	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
NR	XP_003595077.1	1.52E-139	Transcription factor bHLH [Medicago truncatula]
Swissprot	tr\|Q2HIV9\|BH035_ARATH	1.00E-84	Transcription factor bHLH35
trEMBL	tr\|G7IG90\|G7IG90_MEDTR	6.00E-140	Transcription factor {ECO:0000313\|EMBL:AES65328.1}

Sequence

Transcript Sequence

>Glyur002994s00043324.1
CAGGGTCCAGAGAAGACCAGAGAGAGAGAATGTAATAATGTAATAAATACAGACAATAGTAATAATTAACACGTGAGTAATTCCATTCCACCACTCTTCACCCCCTCCCTCACACCTATATATATAACTCCCAGAGTGCTCACAACAACAACAAAAGAGAAATAAAAAAGAAAGGCAAAAGACACAAAAACAAACCACCTTAAATTGGCTTCAAGAAAAAGCATCACATATATACCATATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCATCTTTGTTGTTAATTTGTTTCTCCCTGATCATCAGTGTTTGTTGGTCTCCCTCAGCTTTAAACCATGGAGAATATTGGTGAGGAATACTGGACCAGAATGTTCCTCCAAACCCAAGAGCCGAACAGCTGGGGATTGGATGAGGCTTTGTCAGGGTACTATGATTCAAGTTCCCCTGATGGTGCTGCTTCATCNGCGGTGCAGTCTAAGAACATTNTGTCAGAGAGGAATAGGAGGAATAAGCTCACCCAGAGGCTCTTGGNGCTTAGATCAGTGGTCCCCAACATTAGCAAGATGGATAAGGCTTCGATTATTAAGGATGCAATTGAGTACATACAGCAGTTGCATGAGCAAGAGAAGATTATACAAGCTGAGATAGTGGAGCTTGAATCTGGGATGCCAAAGAACAACAACAACAACAATCCAATTATAGGGTATGAGTTTGAGCAGGAGCTGCCTGTGTTGCTGAGGTCCAAGAAGAAGAGAACAACAGATCAGCAGCTGTATGACTCTGTCACTTCAAGAAACTCCCCAATTGAAGTCCTTGAGCTCCGGGTTACATACATGGGAGAGAATACTGTTGTGGTGTGCTTGACTTGCAACAAGAGGACAGACACAATGGTGAAACTCTGCGAGGTGTTTGAATCCTTGAAGCTCAAGATTATCACTGCCAATATCACTTCCTTTTCAGGCAGGCTTTTGAAGACAGTCTTCATTGAGGCAAATGAAGAAGAGAAAGATCTACTGCAGATAAAGATCCAAACGGCCATTGCAGCTCTTAATGATCCTCTAAGCCCTATGAGCATCTGATGAAGAATTTATACATCTTGGGTTCTCATTTTTAGATAGTTTCTCGTCATTACTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02994	23523	27251	-

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002994s00043324.1	PF00010.21	HLH	51	93	2.30E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.168
SRR1783600	control	11.126
SRR1783602	moderate drought stress	8.735
SRR1811619	moderate drought stress	8.960

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	94.435
DRR006520	Root Summer glycyrrhizin high producing strain	97.374
DRR006521	Root Winter glycyrrhizin high producing strain	0.685
DRR006522	Root Winter glycyrrhizin high producing strain	0.938
DRR006523	Root Summer glycyrrhizin low producing strain	46.947
DRR006524	Root Summer glycyrrhizin low producing strain	46.526
DRR006525	Leaf Summer glycyrrhizin high producing strain	50.896
DRR006526	Leaf Summer glycyrrhizin high producing strain	51.526

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	49.193
SRR2868004	Drought Stress (root)	67.381
SRR2967015	Control (root)	44.369

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	258.994
SRR9715740	Leaf	162.988
SRR9715741	Leaf	330.402
SRR9715739	Root	31.922
SRR9715742	Root	111.814
SRR9715743	Root	87.243

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.341
SRR8749028	MeJA induced 9h	0.253
SRR8749029	MeJA induced 9h	0.344
SRR8749030	Uninduced	13.221
SRR8749031	Uninduced	7.773
SRR8749032	Uninduced	11.684

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	33.517
SRR8400027	Control - Root	61.156