Gene detail information of Glyur002991s00046000 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G60690.1 | 3.00E-36 | SAUR-like auxin-responsive protein family |
| NR | XP_004514848.1 | 9.52E-70 | PREDICTED: uncharacterized protein LOC101506835 [Cicer arietinum] |
| Swissprot | tr|P33080|AX10A_SOYBN | 2.00E-18 | Auxin-induced protein X10A |
| trEMBL | tr|I3T7X1|I3T7X1_MEDTR | 2.00E-64 | Uncharacterized protein {ECO:0000313|EMBL:AFK48613.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02991 | 27241 | 27726 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002991s00046000.1 | PF02519.9 | Auxin_inducible | 70 | 145 | 1.90E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.846 |
| SRR1783600 | control | 2.089 |
| SRR1783602 | moderate drought stress | 3.605 |
| SRR1811619 | moderate drought stress | 3.663 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 20.346 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 19.905 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.230 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.224 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 31.078 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 30.981 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.938 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.579 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.761 |
| SRR2868004 | Drought Stress (root) | 24.469 |
| SRR2967015 | Control (root) | 41.017 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 81.535 |
| SRR9715740 | Leaf | 141.117 |
| SRR9715741 | Leaf | 114.224 |
| SRR9715739 | Root | 128.247 |
| SRR9715742 | Root | 80.922 |
| SRR9715743 | Root | 82.200 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 27.813 |
| SRR8749028 | MeJA induced 9h | 33.794 |
| SRR8749029 | MeJA induced 9h | 38.377 |
| SRR8749030 | Uninduced | 25.884 |
| SRR8749031 | Uninduced | 15.686 |
| SRR8749032 | Uninduced | 51.256 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 18.305 |
| SRR8400027 | Control - Root | 16.920 |