Gene detail

Gene detail information of Glyur002983s00040651.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G53030.1	0	ser/arg-rich protein kinase 4
NR	XP_003590402.1	0	Serine/threonine protein kinase SRPK1 [Medicago truncatula]
COG	YP_004584373.1	1.00E-11	serine/threonine protein kinase with PASTA sensor(s) [Frankia symbiont of Datisca glomerata]
Swissprot	tr\|P51567\|AFC2_ARATH	6.00E-29	Serine/threonine-protein kinase AFC2
trEMBL	tr\|G7I9C7\|G7I9C7_MEDTR	0	Serine kinase-like protein {ECO:0000313\|EMBL:AES60653.1}

Sequence

Transcript Sequence

>Glyur002983s00040651.1
ACTGAATTAAATTAACCGGGAAGGGAAGGGAAGGGAAGTACGGAACCCCACTCCCCCATTTTTGTTTCTGAAAAAATTGCAAAATCGAAACCCCCTTCTCTTCTTCACACCCCAACACTTTTTCTCTTTCTTTTTCCATTTTCTTTCTCTGTTGTTGATTTTTTCCACTCTCAGTTCCCAAACAGAAACAGAAACAGTGTCTGATCCTTGTTGTTGGGGTTCAAAAAAAATGGGGGACAAACGGGAAGACGAGAGGAACGATAGCAGCGATTTCACCTCCGAGGACGAAGGCACCGAGGATTACCGACGCGGCGGTTACCACGCCGTCAGAATCGGNGACACCTTCAACGCCGGTCGTTACGTCGTTCAGAGCAAGCTCGGTTGGGGCCATTTCTCCACTGTTTGGCTCGCTTGGGACACCCATCACTCTAGATACGTGGCTTTGAAAGTTCAAAAGAGTGCTCAGCATTACGCCGAGGCGGCGATGGATGAGATAACNATTTTGCAACAGATTGCGGAGGGAGACCCTGATGATAAAAAATGTGTGGTCAAGCTTTTGGACCATTTCAAGCATTCTGGTCCAAATGGACAGCATGTTTGTATGGTGTTTGAGTACCTTGGTGATAATCTCTTGACCCTTATCAAGTATTCCGACTATCGCGGAATGCCTATCGACATGGTTAAAGAGATATGCTTTCATATTCTGNTTGGATTGGATTACTTACACAAGCAGCTTTCTATCATACATACTGACTTGAAGCCTGAAAACATCCTCCTCTTGTCGATGATCGATCCGTCTAAGGATCCTAGGAAGTCTGGTGCTCCTCTTATTCTTCCCAGTACTAAAGACAAGACANTACTGGAGTCAACAGCTGCAAAAGACACGAAAACATCAAATGGAGATTTGATTATGAATCATAAGAAAAAGATCAAGAGAAAAGCTAAGCAAGCAGCTCATGGATGTGCCGAGAAGGAAGCATCTGAAGGAGTTGAGGGTAATCCTGAAACCTCTGGTGCTGTAGAATCATCTCCAAATGCAAATTCTGCAAGGGAACAAGCCTCTAGTTCTGCAGGCACCAGTAGGTTATCAGATGCTGATCGAACAAAGTTAAAAGACCAGGGCAACAAAAGAGGGAGCCGCACAATGAGACAGAAACTGCTGGCTTCAATTGATCTCAAGTGCAAGTTAGTTGACTTTGGTAATGCTTGCTGGACATATAAACAATTTACAAATGATATCCAGACAAGACAGTATCGGTGCCCGGAGGTTATCCTTGGATCGAAATATTCTACATCTGNGGATCTTTGGTCGTTTGCTTGCATTTGTTTTGAGCTTGCAACTGGAGATGTGTTATTTGATCCTCATAGCGGTGACAACTTTGATANGGACGAGGACCACTTAGCATTAATGATGGAACTTCTTGGAATGATGCCACGNAAGATTGCACTAGGGGGCCGTTATTCCCGTGATTTCTTTAACAGATACGGTGATTTGAGGCACATCCGTCGGTTGCGATTCTGGCCCTTGAATAAAGTCCTCATGGAGAAGTATGATTTTAGTGAGAAAGATGCAAATGACTTGAGTGACTTTTTGATTCCCATCCTTGACTTTGTTCCCGAGAAACGGCCGACGGCCGGTCAGTGCCTGCTACATCCATGGATCAATGCAGGCCCGCGTCTTTTGGAGCCATCGTTGCCTTCTTCTAATCACAACCCTGTTGCTGAAACTGCTATTTCTGACCAGAAGCATAGGGACAAGGATGATAGAGAGGCCATGGAGGCAGGAATGGGAAGTATTGCCATCAATTCAGATTCTAAACCACTCTTGCATTCCCCATCTAAGAAAGCCTTCCAAGGCAGCCGCAAGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02983	20761	28617	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.5.7

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002983s00040651.1	PF00069.20	Pkinase	44	184	6.00E-23
Glyur002983s00040651.1	PF00069.20	Pkinase	314	478	9.60E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.382
SRR1783600	control	16.434
SRR1783602	moderate drought stress	20.886
SRR1811619	moderate drought stress	20.632

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.557
DRR006520	Root Summer glycyrrhizin high producing strain	19.467
DRR006521	Root Winter glycyrrhizin high producing strain	16.955
DRR006522	Root Winter glycyrrhizin high producing strain	16.462
DRR006523	Root Summer glycyrrhizin low producing strain	21.014
DRR006524	Root Summer glycyrrhizin low producing strain	21.065
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.960
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.346

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.535
SRR2868004	Drought Stress (root)	26.067
SRR2967015	Control (root)	31.447

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.694
SRR9715740	Leaf	13.281
SRR9715741	Leaf	16.763
SRR9715739	Root	22.314
SRR9715742	Root	24.825
SRR9715743	Root	25.443

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.613
SRR8749028	MeJA induced 9h	21.539
SRR8749029	MeJA induced 9h	9.355
SRR8749030	Uninduced	7.150
SRR8749031	Uninduced	5.801
SRR8749032	Uninduced	10.176

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.151
SRR8400027	Control - Root	21.149