Gene detail information of Glyur002983s00040650 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G53020.1 | 7.00E-60 | Ribosomal protein L24e family protein |
| NR | KDP29235.1 | 1.86E-93 | hypothetical protein JCGZ_16624 [Jatropha curcas] |
| COG | YP_003736908.1 | 1.00E-08 | 50S ribosomal protein L24E [Halalkalicoccus jeotgali B3] |
| Swissprot | tr|Q9FUL4|RL24_PRUAV | 6.00E-87 | 60S ribosomal protein L24 |
| trEMBL | tr|A0A067KAG6|A0A067KAG6_JATCU | 7.00E-94 | Uncharacterized protein {ECO:0000313|EMBL:KDP29235.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02983 | 263 | 2410 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002983s00040650.1 | PF01246.15 | Ribosomal_L24e | 3 | 73 | 1.20E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 50.677 |
| SRR1783600 | control | 51.222 |
| SRR1783602 | moderate drought stress | 55.561 |
| SRR1811619 | moderate drought stress | 56.770 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 117.369 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 117.393 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 68.722 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 70.394 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 118.122 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 125.997 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 32.478 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 31.665 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 355.169 |
| SRR2868004 | Drought Stress (root) | 206.598 |
| SRR2967015 | Control (root) | 178.830 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 113.444 |
| SRR9715740 | Leaf | 107.103 |
| SRR9715741 | Leaf | 110.455 |
| SRR9715739 | Root | 39.639 |
| SRR9715742 | Root | 92.654 |
| SRR9715743 | Root | 82.147 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 598.768 |
| SRR8749028 | MeJA induced 9h | 304.360 |
| SRR8749029 | MeJA induced 9h | 505.295 |
| SRR8749030 | Uninduced | 202.824 |
| SRR8749031 | Uninduced | 196.373 |
| SRR8749032 | Uninduced | 154.142 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 179.861 |
| SRR8400027 | Control - Root | 148.769 |