Gene detail

Gene detail information of Glyur002978s00043152

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G17850.1	8.00E-97	Sodium/calcium exchanger family protein
NR	XP_003624717.1	0	Cation/calcium exchanger [Medicago truncatula]
COG	YP_001530245.1	2.00E-10	CaCA family Na(+)/Ca(+) antiporter [Desulfococcus oleovorans Hxd3]
Swissprot	tr\|Q9FKP1\|CCX1_ARATH	4.00E-158	Cation/calcium exchanger 1
trEMBL	tr\|G7L1K1\|G7L1K1_MEDTR	0	Cation calcium exchanger {ECO:0000313\|EMBL:AES80935.1}

Sequence

Transcript Sequence

>Glyur002978s00043152.1
ATGTCTGCTNCAACCCCAACCGGTACCATAGTGTCACTGTCCAAAAAACGCACGGGTTTTTTCACCGTGTTCGNGAACACCTCGTCCCTCTTGGTGTTTTGTGCTTCTTTTATTGTTCACTTCCACTCTTCAGAACATGCTAATTTTCTTCTTCTTCTGAGGAGCAACCGTTTTGCCTTTGGTGACACTGTTGATCAGGATTGCAAGAACTTCCACAGCCTGAGTGACTATAAAGCCAAGTGCTTGTTCCTGAAATCCAACAACCCATGTGTCACTCAGGGCTATATTGATTACCTTTACCTTTTCTTTTGCAAATTTGGGAGATTCCCTCTATTGGGTCACACCCTTTTGTTTCTATGGCTCTTGGTTCTGTTCTATCTCCTTGCCAACACAGCTTCTGAGTACTTTTGTCCTTCCCTTGAAAACCTGTCCAAATTGCTGAGGCTATCCCCAACTATTGCTGGGGTGACTCTTCTCTCTCTTGGCAATGGTGCCAGTGATGTTTTTGCTACCCTTGTCTCTTTCAAGGGTAGTGGGACCCGTGGCATTGGCTTCAACACTGTGCTCGGTGGTGCTTCCTTTGTGTCATGTGTTGTGGTGGGGATAGTGAGCATCTCAGTTCGCCACAGGGGAAGCCGGGTTAACAAATCTGCCTTGGTGAGAGATGTTTGTTTCCTTCTCTTGGTTCTTATGTGCCTTTTCGCCATCTTGGTCACTGGTGAGATCAATGCTCCTGAGGCAATTGGTTTTTGCTTGTTGTATGTGATGTATGTGGTTGTTGTTTTTCTCTCATCGTCATCTACAAGAAGGNAGGATGGTGTATGTGAAGATGCTGAAAGAAGTGGTGATTGTGATTCAAGTNTTCATGACAATGGTTTAGGTGTCCCTCTTCTCAATGATTGTGCTCACTTGAAAATTGAGAAGACACACACACACTGTTGTAAAAAGTCTTCAATATGTGAAATGTTACTTTATGTCTTGGATATGCCTCTTTACTTGCCTAGGAGATTGACAATTCCTGTTGTTTGTGAAGATAGATGGTCAAAGGTTTATGCAGTTTCTTCAGCTATGCTAGCACCACTTCTCTTGTGTTTCCTCTCCAACTCAAGCCTTATAGTTTATGGAATTGGATTATTGGTTGGGATTGCATTAGGGGTAACTACATTTTTCACAACCGAGGTGTCAAACCCACCAAGAAAGTACCTTTTTCCTTGGCTTGTTGGAGGGTTTGTGATGAGCATGACATGGAGTTACATTTCAGCTCAGGAATTGGTGGGGTTGTTGATTTCACTTGGTTACATATGTGGGGTGAGTCCTTCAATATTGGGGTTCACAGTTCTTGCCTGGGGTAACTCACTTGGGGATTTGGTGACTAATTTGACAATGGCCTTAAATGGTGGACCAGAAGGTGCTCAAATAGCAATATCAGGTTGTTATGCTGGACCTATCTTTAACACNGTTGTTGGGTTGGGCTTATCTCTTGTGTGCTCTACTTGGTCTGAGTACCCTTCATCTGTTGTGCTCCCAAGAGATCCTTATTTGTGGGAGACTTTGGCACTTTTGGTGGTTGGGTTGGTTTGGTCACTTGTGGTTCTGATTAGAAGAGATATGAGGCTTGATGCTGTTCTAGGAGGAGGGCTTTTAGCTGTTTACTTCATTTCTCTGATTCTGAGGCTGATTCAGACATTAGGGTCTCTCCAATTTAGGGACATGTCAGTGTTGCTGATCTTCAAGAAATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02978	1467	3206	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002978s00043152.1	PF01699.19	Na_Ca_ex	130	260	5.20E-22
Glyur002978s00043152.1	PF01699.19	Na_Ca_ex	416	557	2.20E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.744
SRR1783600	control	5.646
SRR1783602	moderate drought stress	2.035
SRR1811619	moderate drought stress	1.950

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.504
DRR006520	Root Summer glycyrrhizin high producing strain	16.341
DRR006521	Root Winter glycyrrhizin high producing strain	1.230
DRR006522	Root Winter glycyrrhizin high producing strain	1.203
DRR006523	Root Summer glycyrrhizin low producing strain	14.872
DRR006524	Root Summer glycyrrhizin low producing strain	15.206
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.928
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.119

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.813
SRR2868004	Drought Stress (root)	6.674
SRR2967015	Control (root)	10.012

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.578
SRR9715740	Leaf	8.956
SRR9715741	Leaf	14.658
SRR9715739	Root	22.405
SRR9715742	Root	25.532
SRR9715743	Root	24.887

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.488
SRR8749028	MeJA induced 9h	1.130
SRR8749029	MeJA induced 9h	0.957
SRR8749030	Uninduced	1.379
SRR8749031	Uninduced	0.051
SRR8749032	Uninduced	0.279

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.188
SRR8400027	Control - Root	18.921