Gene detail

Gene detail information of Glyur002975s00041478

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G37630.1	ARM repeat superfamily protein
NR	XP_004503123.1	PREDICTED: condensin complex subunit 3-like [Cicer arietinum]
trEMBL	tr\|I1LMB5\|I1LMB5_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G33580.1}

Sequence

Transcript Sequence

>Glyur002975s00041478.1
ATGGTCATGGAGGACAACAACACAGACCAAGAGAAGCGACTTACCCAGAAAATCGCTTCNATTCTCGACGATGCNCGAACCTCACACGCAACTCACAACCGAAAGCTGAAGGAACTAACCCTCCTCCGATCCAAATCCCCTTCCCCGTCGCACTTCTTCTGCGCCTTCTCCAAAGCCCTAATTCCCCTCTTCCACTTCCAGAGACGCCTCGCCTCCGCGGACCGTGTCGTTTCCTTCGTCTCCGCCTTCGCCGCCGCCCGAAATCCTTCCGATGCTGCCGCTTCCGACGAGTTCCTCGACCACTTCCTCAACTTCCTCCTCGCCGCTGCCGTTGCCGCCAATAAGACTGCCAGGTTCAGAGCCTGCCAGATCGTCTCCGAGATAATATTGCGGCTACCAGATGATGCAGAAGTGANCAATGACCTGTGGGATGAGGTGATAGAATGCATGAAGGTTAGGGTACGGGACAAGATCCCTGTGGTGCGTACTTTTGCGGTTAGGGCTCTTTCGCGCTTTGTGAATGACTCTGTCAACAGTGACATCCTCCATTTGTTCCTTGAGATGCTTCCCTTGGAACAGAATGNGGTAAGCGACGTTCGTAAGATGATTGTGTTGTCTTTGCCTCCTTCTAGTGCAACCTCTCAAGTTATCATTGATTGTACCTTGGATGNGAGTGAATCTGTACGCAAAGCAGCATACTGTGTTCTAGCAAATAAATTCCCTCTTCAAAGCTTAAGCATTAAGCTCAGGACAGTAATTCTTCGGAGAGGACTTGCTGACCGATCTGTTGCNGTCTCAAAGGAATGTTTTAAATTATTGAAAGATGAATGGCTTATAAAGTGCTGTAACGGTGATCCTTTAGAGCTTTTGAAGTATCTTGATGTTGAAACCTATGAATCAGTGAGTGAGTCTGTCATGGAGGCACTTCTAAAAGCTGGTTTAGTAAAACTAAAGAATGGTGCAAGTATCCAGCAATATACATCATCAAAAGGTGACACAACAGAAGGGGAGTCAGTTCATTGCCCTCCAAGCATCACGCTGATGGGAGCAGAGGCTGCTCTTTATTGGAGAACTGTTTGCAAGCATTTGCAGTCAGAAGCACATGCCAAAGGCTCTGATGCTGCTGCCACAATGGGCACCGAAGCAGAAGTATATGCAGCAGAAGCATCAGATAAAAATGACCTTCTAGAAAAAATTCTTCCTGCTACAGTTGATGAATACATTGAGTTGGTCAGAGCTCATATCAATGCTGGATTAAACCATCGCTTCGCATGCCGGCAGCTGCTTTTGCTTGGTGGGATGTTTGATTTTTCTGATGCTACAAATAGAAAGACTGCTGGTGCATTTCTGCAGGAGCTGATGAGCAAGCCTCCAGAGCATGAGGTTGATAATGAAGGGAACGTTGTTGTCATTGGAGATGGATTGAGTTTTGGTGGAGATAATGANTGGGCTGAAGCCATAGCCAGATTGGCAAGGAAAGTCCATGCTGCTCCNGGTGAATTTGAAGAAGTTGTTCTTGCAATCATAGTAGGGCTAGCTCAACCTTGTAGGGAGAGAATAGCAGATTATGTGCAGTGGATACACACCCTTTCTCTTACTGGCCTTTTACTGAAAAATGCAGTGTCAATGCGCTTTCTTCAGGGCAAGGCTATTGAACCAGATGAACTACTCCAATCTTTACTACTACCTGGGGCGAAACAATCTCACNTGGACGTGCAAAGGATTGCAGTCAGATGTCTTGGCCTCTTTGGGCTTTTGGAGAGGAAACCAAATGCTGAACTTTTGAAACAGCTGAGGATTTCATATATTAAAGGGCCGCATTTAATTAGTATAGAGGCATGTAAAGCATTAATTGATCTTGTGATGTGGCATGGTCCTCAAGAAGTTGACAGGGTTTTGAAGCCCGACATTCCATACCAAATAAACTGTGACAAGAAGAGTTTTTGTCCTGTGAATTTCTCTGATTCAGAAGAGAATTCAAATTCAAATGCTGAAATGCTTGATATTTTATACGGTGGCTTTGAAAATGATGACTGGGCCAGTCCTTTAACTAGCAATGAAGATGAGTGCATTTATGCTGTACTTGGGGAGGGGTTTGCCAAAATTCTTCTCTTAAGTGACAACTATCCAAGCATACCGTCTTCTTTGCATCCAGTGCTTTTATCTAAGATCATTTACTTGTACTTCAGCGACGTGTCGGAAAACCTGCACAGGTTGAAGCAATGCTTATCCGTTTTCTTTGAGCACTACCCATGTCTCTCAGCCAATCATAAGGCAAGCGTTGCTGATAGGTGCATATCGAAGGCTTTCATTCCAGTTATGCGTTCAATGTGGCCAGGAATTTTTGGCAATTCTGGCGGTTCTACTTTTATGGTGTCCCAGATGCGTAAGCGTGCTGTTCAAGCTTCACGTTTTATGTTGCAGATGGTGCAGATTCCTTTATACATTAAAGAGACTCAACCAGAGTGTGAAAAAACTAGTACCGAACACCCAGAAGTTATAGATAGTTGTGCTGAAGTTCCATTTGAGTGTGGTGAGGAGGGGCTTGCACTACGCATAGCCATAGAGGTGGCAAGCTTTCACTCGAAGAAGACAGCTGCTGAGAAGGCATATGTGTCGGCATTATGTAGAATACTGGTCTTGCTTCATTTTCGGTTNTCAGAACAAGGGCCGATTAAAATTATGAGGAAGCTTTTATGTCGTATGGTTGAATGTGTATCTTCAGAGAAGGATCTTGTTAAAGAATTGAAACGCATGGCGGAACATCTCATGACAGTTGATAGGCAACCTGATCAGGAATTGTTGCAAGATGATGTTAATCTCATTTTGGGGAAACTGGAACTTGACTTCAACCTGGATTTGGATGGTTCTATTGCAATGCCACAAACACCAGCTGTACAGCCAACCAGACCCACGCGTTCTAGGAGAAGGGTAAGGATTGAGGAAGATAGTTCTGATGAAGAAGTTTCGCCTGCTTCCGTGGTTCCTACCACCCATCATCATACGGTACAAAGTCGCTCACAGAGAGCAAGCAAAACTGCAGCCATGAACAAAATGTCTGCCTGTAGATCACTCAAAACTGATGAAATTGAAGACCAAGAGGAACAAGACTCGGATGTGACATCTGAAGATTCTGACGAATCCGACCAGTACAGTTAGATATATGTAGTTGACATGATAAATTTTCTATGTTGTTGTATTGTTTGGTTTAGATTGCAGGTTTTGTACAGAAGAGGCATCAATAGTTCAGC

Protein Sequence

>Glyur002975s00041478.1
MVMEDNNTDQEKRLTQKIASILDDARTSHATHNRKLKELTLLRSKSPSPSHFFCAFSKALIPLFHFQRRLASADRVVSFVSAFAAARNPSDAAASDEFLDHFLNFLLAAAVAANKTARFRACQIVSEIILRLPDDAEVXNDLWDEVIECMKVRVRDKIPVVRTFAVRALSRFVNDSVNSDILHLFLEMLPLEQNXVSDVRKMIVLSLPPSSATSQVIIDCTLDXSESVRKAAYCVLANKFPLQSLSIKLRTVILRRGLADRSVAVSKECFKLLKDEWLIKCCNGDPLELLKYLDVETYESVSESVMEALLKAGLVKLKNGASIQQYTSSKGDTTEGESVHCPPSITLMGAEAALYWRTVCKHLQSEAHAKGSDAAATMGTEAEVYAAEASDKNDLLEKILPATVDEYIELVRAHINAGLNHRFACRQLLLLGGMFDFSDATNRKTAGAFLQELMSKPPEHEVDNEGNVVVIGDGLSFGGDNXWAEAIARLARKVHAAPGEFEEVVLAIIVGLAQPCRERIADYVQWIHTLSLTGLLLKNAVSMRFLQGKAIEPDELLQSLLLPGAKQSHXDVQRIAVRCLGLFGLLERKPNAELLKQLRISYIKGPHLISIEACKALIDLVMWHGPQEVDRVLKPDIPYQINCDKKSFCPVNFSDSEENSNSNAEMLDILYGGFENDDWASPLTSNEDECIYAVLGEGFAKILLLSDNYPSIPSSLHPVLLSKIIYLYFSDVSENLHRLKQCLSVFFEHYPCLSANHKASVADRCISKAFIPVMRSMWPGIFGNSGGSTFMVSQMRKRAVQASRFMLQMVQIPLYIKETQPECEKTSTEHPEVIDSCAEVPFECGEEGLALRIAIEVASFHSKKTAAEKAYVSALCRILVLLHFRXSEQGPIKIMRKLLCRMVECVSSEKDLVKELKRMAEHLMTVDRQPDQELLQDDVNLILGKLELDFNLDLDGSIAMPQTPAVQPTRPTRSRRRVRIEEDSSDEEVSPASVVPTTHHHTVQSRSQRASKTAAMNKMSACRSLKTDEIEDQEEQDSDVTSEDSDESDQYS

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02975	13690	22112	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007076 mitotic chromosome condensation

cellular_component
GO:0000796 condensin complex

molecular_function
GO:0005488 binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002975s00041478.1	PF12719.2	Cnd3	528	887	7.00E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.089
SRR1783600	control	1.042
SRR1783602	moderate drought stress	0.814
SRR1811619	moderate drought stress	0.808

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.153
DRR006520	Root Summer glycyrrhizin high producing strain	2.238
DRR006521	Root Winter glycyrrhizin high producing strain	0.068
DRR006522	Root Winter glycyrrhizin high producing strain	0.067
DRR006523	Root Summer glycyrrhizin low producing strain	0.401
DRR006524	Root Summer glycyrrhizin low producing strain	0.355
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.257
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.256

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.221
SRR2868004	Drought Stress (root)	11.214
SRR2967015	Control (root)	7.487

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.084
SRR9715740	Leaf	0.095
SRR9715741	Leaf	0.191
SRR9715739	Root	0.332
SRR9715742	Root	0.845
SRR9715743	Root	0.595

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.757
SRR8749028	MeJA induced 9h	3.806
SRR8749029	MeJA induced 9h	3.091
SRR8749030	Uninduced	1.016
SRR8749031	Uninduced	0.345
SRR8749032	Uninduced	0.927

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.710
SRR8400027	Control - Root	3.213