Gene detail

Gene detail information of Glyur002974s00035228.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G02720.1	1.00E-171	Class I glutamine amidotransferase-like superfamily protein
NR	XP_003600603.1	0	Intracellular protease [Medicago truncatula]
COG	YP_008089796.1	1.00E-77	intracellular protease, PfpI family [Chthonomonas calidirosea T49]
Swissprot	tr\|Q9M8R4\|DJ1D_ARATH	0	Protein DJ-1 homolog D
trEMBL	tr\|G7J7W0\|G7J7W0_MEDTR	0	Class I glutamine amidotransferase superfamily protein {ECO:0000313\|EMBL:AES70854.1}

Sequence

Transcript Sequence

>Glyur002974s00035228.1
GTCATCTCATCACCGAAAGCTTTTGGTCTNTACTCTCACTCAGAGCCTTAGTTAGTAGCATTGCAGATTGCATCCACCCAATCCAAACCATGGCTCCCAAAAGGGTTCTTCTACTCTGCGGTGACTTCATGGAAGACTACGAAGGCATGGTTCCATTTCAGGCACTGCAAGCTTTCGGTGTCGCCGTTGACGCCGTTTGTCCAGGAAGGAAATCCGGCGACAACTGCCGCACCGCCGTCCACATTCTTTCCGGTGGCCAGACTTATACTGAGACAGTTGGTCACAATTTTACACTCAATGCAACGTTTGATGAAATTGATCACACAAGCTATGATGGGTTGTGGCTGCCGGGAGGAAGGGCGCCGGAGTATCTTGCTCATATTCCTAGTGNTGTGGAGCTGGTGTCCAAGTTTGTCAGTTCTGGAAAACAAATTGCTTGCATTTGTCATGGCCATTTGATTCTGGCAGCTGCTGGGGTGGTTCAAGGTCGCAAGTGCACAGCTTTTCCTCCTGTCAAACCGGTATTGGTTGCTGCTGGTGCTCATTGGGTTGAACCTGACACCATGTCAACAACAGTGGTGGATGGTAATCTCATCACTGCACCTACTTATGAAGGGCACCCGGAACTTATTCGGCATTTTGTGAAGGCATTAGGAGGCAAAATAAGTGGCTCCAACAAGAAAATCCTCTTCATTTGTGGGGATTACATGGAAGATTATGAGGTCAAGGTTCCTTTTCAGTCTCTTCAGGCTTTAGGATGTCATGTTGATGCAGTTTGCCCCTCAAAGAAGGCTGGTGACACTTGCCCAACTGCTGTTCATGATTTTGAAGGAGATCAAACTTACAGTGAGAAGCCAGGACATAATTTTACTTTAACTGCAACCTTTGATGATGTGGATGCTTCAGGCTATGATGCTCTTGTCATCCCTGGAGGTCGATCACCTGAGTACTTGTCATTGAATGAGTCAGTTATTGCCTTGGTGAAGCATTTCATGGAAAGCAAGAAGCCAGTGGCATCTATCTGCCATGGCCAACAGATTTTAGCTGCTGCTGATGTTCTCAAGGTATNATTACTCCTGGGAAGGAAATGCACTGCTTATCCGGCTGTGAAGCTTAATGTGGTTCTGTCAGGAGCAACATGGCTGGAGCCTGACCCGATAAGCCGTTGCTTCACCGATGGAAATCTTGTTACTGGAGCTGCATGGCCAGGGCACCCTGAGTTCATTTCTCAGTTGATGGCACTACTTGGTATTCATGTATCTTTCTAGTAATGTTTTGTAACATAATGAATAAAAATCGCCACAAGCGTCTAGTATCGTAGATTCAAAATAAGTGGATGTGTATTACCGTATTGTATTTGAAGGACTTGTAATGTGCAAGGGCATGCATGCACTTATTTCTGTGAGCAAAGTGTCTCTTGTGGCTAGTCTTTTTCCCAATTATTTAATATCTACAAAGGGAAGGATAAACACAATTTTTNCACGATAGTAATTTCAATGAGAGAGAACCCATTTCCAATATTGCACCATTGGGTCAATATTGTCAGTGCTGAACAATTTAGACTGGAGTTCAGTAAGTTAGCATACTGGCAATTGACAAAATAAGTGGATGTTAAGCATCATAAGTGCATACCCTTTTTAACCATACACAAAATAATTAATCGCACACACTTGCATAATTTTTCCTTNAATATTGACAAACATATTTGTAGAAGTGCTAGCAATACACTCAATCTTTTCAAGACTCCTATTATTGGCTGAAATTCATGTGACAATGACCTATTTAGAAATAGGTCTNACTAAATAGGAAATGAGAGCCATCNAATTTAGTGAGATCCACCTGAATTTTATCTAATAATAGAGTGTTGGAAAGAATATTTTAAGAACTATGTTACTATACTTTTTTTTCTTCAACATTCTTATTTCTAATTCTACTCTATTAAATCAACACCACAATAGTCACTATTTCACAGTATGCTTTATACTTGTATGATTGATGGAATCAAAGAGCAATCCTCAAATGTTTTATCCTGTTACTTTTTTTGGTTCGAGTCCCTTTACTGCTACCCATAATTATCTGGCTGATGGAATAGAAATGGAGGCAGTAGCATTAGATGTAGAAGAACCAGTAGTTGAGGTAGAGTGTCCTTCCCGAGACTTGGGATTCGTTTCTATAAACACAGGCATAGTTGGTTGCAGGTGCTCCAGTAAGCTCTTGCTTTGGAGGAGGACTACCACTTCAGACATTGTTGGCCTCATACCAGCTGATGCTTGAGTGCACAGCAAAGCAATCTCTATGACTTTCTTCACTTCTTCTCCATCATACTCATTAGGGTCTATGGCCTTGTCCACCAGCTCCAAGTGCATGCCTCTCTCATGCAGTTTCCATGCCTGTTAAAGTGAAAATCAAAGTTTAAAGACCATATGGTTATAAAATATTACGAGATAGATAATNACTAACAATTCCTAGTTATGCATGAGACATTGCTTACTCGTTGAAGAAGGTATTCACCATCATCAATATCAGCCTTTACTTCGGTACTCCTTCGACCACTTATGATTTCTAGGACTACAATACCATAGCTGTATGTATCAGCCTTCTCTGATAATTGACCGTGGATTGCATACTCAGGTGCTGTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02974	24696	28807	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K18881	DJ1D	EC:4.2.1.130	Pyruvate metabolism	map00620

Gene Ontology

molecular_function
GO:0016798 hydrolase activity, acting on glycosyl bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002974s00035228.1	PF01965.19	DJ-1_PfpI	62	189	2.50E-29
Glyur002974s00035228.1	PF01965.19	DJ-1_PfpI	226	386	1.50E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	189.783
SRR1783600	control	195.230
SRR1783602	moderate drought stress	247.253
SRR1811619	moderate drought stress	252.511

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	222.527
DRR006520	Root Summer glycyrrhizin high producing strain	222.669
DRR006521	Root Winter glycyrrhizin high producing strain	21.340
DRR006522	Root Winter glycyrrhizin high producing strain	20.673
DRR006523	Root Summer glycyrrhizin low producing strain	118.160
DRR006524	Root Summer glycyrrhizin low producing strain	117.793
DRR006525	Leaf Summer glycyrrhizin high producing strain	64.896
DRR006526	Leaf Summer glycyrrhizin high producing strain	63.943

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	76.889
SRR2868004	Drought Stress (root)	77.428
SRR2967015	Control (root)	72.217

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	47.942
SRR9715740	Leaf	49.461
SRR9715741	Leaf	52.062
SRR9715739	Root	239.943
SRR9715742	Root	297.718
SRR9715743	Root	287.831

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.714
SRR8749028	MeJA induced 9h	6.530
SRR8749029	MeJA induced 9h	6.891
SRR8749030	Uninduced	2.834
SRR8749031	Uninduced	2.275
SRR8749032	Uninduced	3.590

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	190.730
SRR8400027	Control - Root	283.128