Gene detail information of Glyur002974s00035224 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G01918.1 | 4.00E-25 | PsbQ-like 3 |
| NR | AES70847.2 | 2.23E-95 | oxygen-evolving enhancer protein [Medicago truncatula] |
| Swissprot | tr|Q2V4B2|PQL3_ARATH | 1.00E-29 | PsbQ-like protein 3, chloroplastic (Precursor) |
| trEMBL | tr|G7J7V3|G7J7V3_MEDTR | 8.00E-96 | Oxygen-evolving enhancer protein {ECO:0000313|EMBL:AES70847.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02974 | 6593 | 8567 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002974s00035224.1 | PF05757.6 | PsbQ | 99 | 209 | 3.20E-19 |
| Glyur002974s00035224.2 | PF05757.6 | PsbQ | 80 | 190 | 2.40E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.537 |
| SRR1783600 | control | 0.577 |
| SRR1783602 | moderate drought stress | 0.649 |
| SRR1811619 | moderate drought stress | 0.567 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.178 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.191 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.626 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.584 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 25.087 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 25.356 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.363 |
| SRR2868004 | Drought Stress (root) | 1.752 |
| SRR2967015 | Control (root) | 2.109 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.068 |
| SRR9715740 | Leaf | 17.157 |
| SRR9715741 | Leaf | 4.628 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.474 |
| SRR9715743 | Root | 0.372 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.376 |
| SRR8749028 | MeJA induced 9h | 5.851 |
| SRR8749029 | MeJA induced 9h | 3.188 |
| SRR8749030 | Uninduced | 3.618 |
| SRR8749031 | Uninduced | 1.347 |
| SRR8749032 | Uninduced | 1.659 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.355 |
| SRR8400027 | Control - Root | 1.815 |