Gene detail

Gene detail information of Glyur002961s00038604

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G55830.1	7.00E-99	Nucleotide-diphospho-sugar transferases superfamily protein
NR	KHN31560.1	0	Exostosin-2 [Glycine soja]
Swissprot	tr\|Q9LY62\|GT644_ARATH	3.00E-123	Glycosyltransferase family 64 protein C4 {ECO:0000303\|PubMed:24905498}
trEMBL	tr\|I1MQ61\|I1MQ61_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G32650.1}

Sequence

Transcript Sequence

>Glyur002961s00038604.1
GTCGTTTTAAGGTTATACGGCAGAAAATGGAGGTGTCGTTTGGAAGCAAANACACAGTCTACACTATCGCTTTTGCAGTGTGAAGCGCTCTCAATATCACCATCGCCAATCCATCGAAACATGGCGACGCGAATCAACTTCAACATCGCGAACTAATCTGAGCATATCCCGAATGCACCTTGAGCCATGTCCACCCTCATTCCGATTCGAGACTCCGCCGCCGTCGCCTCCGACGGCATCAATTCGCCGGCGAAGCAGAAAGCCGTAAACCGAGCTGCNTATGGCCACCGCTCCCTTCTCAACCTTCGTCGAGCCAAACAGTTTCTCTTCGCTGCCAAGTTTAAGCTCTTGTCTGTGTTCGTTGCTTTCTCCGTCGTCGTTTTGGTCTCCTACAGGCTCAGTTCCTGCATGGGTTGGAACCCTCACCACGCTTCCTCGGTTTCTTCTACTTCAAGGGGTGGCTATACNGTGCTTATAAACACATGGAAGCAAAATTCTCTTCTGAAACAAACTGTTGCTCATTATGCATCCTGTCATAGTGCTGATGCGATACATGTGGCGTGGAGTGAGAGTGAACCACCGTCTGAGATGCTGAAAACGTATCTTAATAAGATTGTGGTTTCGAAGTCTCAGCGAGCTCATAAACCAAATTTTAGATTCGACATCGATGCAAAAGATCAATCAAACAGCAGGTTTAAGCCAATAAAGGACCTCAGGACAGACGCGATTTTCTCAGTTGATGATGACGTGATTGTTCCATGTTCTACTCTAGATTTTGCTTTCTCTGTTTGGCAAAGTTCTCCATTCACAATGGTGGGATTCGTTCCTCGAATGCACTGGCTGGATAAGGAGCAAAATAATGTTGCATATTACAGATATGGAGGATGGTGGTCAGTTTGGTGGACNGGCACTTATAGCATGGTTCTATCAAAGGCTGCATTTATTCACAGGAAATACTTGGATTTATATAATAATGAGATGCCTCAATCAATTCAAGACTATGTTTCGAGGGAGAGAAATTGTGAAGACATTGCAATGTCTCTTCTTGTCGCNAATGCTACAGGTGGTCCTCCAGTATGGGTGAAAGGCAAAATCTATGAGATTGGGGCATCGGTCGTTAGCCGTCTGAGAGGGCATAGCCACAGGAGAAATGGATGTCTCAATGATTTGATATCGCTTTACGTAACTCTTCCTCTTGTGTCAACTAATGTCAAAGCAGTTAGCGCTAGGAATGAATGGTTATGGTAGTTTTGTTCTTNCATTAATCACTCGGCCACCAATCCATTCTAACCCCACCAAGAAAGAAAGAACAGAACTAGAGATCAAGGGTCATATAAGTTAAGGAATCTTTGGCATATATATAAGTTCAACTTAAGTGTCTTACAAGGTTTTGATTCATTAATGTCAGATGCAAAACATGATATAATTTGCATCTAGTGAAGGGTCTTTTTTNCCCCTCTATTTTATTTTATTTTTCCTCCATAAATTCAAGAATGACTATGCAAATACATTTCCTCACACCTAGATCAGTTCTATTGAGCTATCAGCATAATAACTGTACAATGCACATGCCTGTTCTAGCCATTCTCCTTGTACTGCAAATGTGTAGGTACTATTGGCCTGGATTATGCAGANCTTATCTACTATATAAGCACATGGATGGTGGACAGTTGTGGGCTGTGGTTATTATGAAGATAAACAAAAATGAAATAATGAATGTTAAGAGTTAGACAAGGAATAGTGGAGAGAGAAGAAAGCAGCATCATTTTTCCACTTTTGAATATTGATCTCTATTGTTTTTCTTTTCTAGTAAATTGCTGTGGAGCTTTTGGAAAGACATAACATCCGGAAATAGTGCGACATCTCTCTTTTATTTGTTGAGGTTTATTTTCGAAGGAGTCATCTTTGTTGGTTGTTGTATAGCAACAAAGAAAAGGTTTGCAAATAATTTCCTTACTATCGCTTGTAGATTCTTTCTTTTTGTTTTGGCCAGGGGGGATTAGGGGGGGCGGTCCCCCACCTTCGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02961	25904	30800	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT64

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006024 glycosaminoglycan biosynthetic process

GO:0015012 heparan sulfate proteoglycan biosynthetic process

cellular_component
GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002961s00038604.1	PF09258.5	Glyco_transf_64	93	344	4.40E-74

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	28.451
SRR1783600	control	28.276
SRR1783602	moderate drought stress	25.342
SRR1811619	moderate drought stress	25.135

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.272
DRR006520	Root Summer glycyrrhizin high producing strain	18.051
DRR006521	Root Winter glycyrrhizin high producing strain	17.743
DRR006522	Root Winter glycyrrhizin high producing strain	17.387
DRR006523	Root Summer glycyrrhizin low producing strain	16.715
DRR006524	Root Summer glycyrrhizin low producing strain	16.848
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.726
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.544

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.655
SRR2868004	Drought Stress (root)	17.241
SRR2967015	Control (root)	17.380

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.264
SRR9715740	Leaf	23.147
SRR9715741	Leaf	20.042
SRR9715739	Root	9.181
SRR9715742	Root	13.637
SRR9715743	Root	11.721

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	60.814
SRR8749028	MeJA induced 9h	57.699
SRR8749029	MeJA induced 9h	70.781
SRR8749030	Uninduced	47.876
SRR8749031	Uninduced	40.998
SRR8749032	Uninduced	49.203

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.244
SRR8400027	Control - Root	24.881